Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF19137

Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2599 and DVU2600 are separated by 140 nucleotidesDVU2600 and DORF19137 are separated by 26 nucleotidesDORF19137 and DVU2602 are separated by 11 nucleotidesDVU2602 and DVU2603 are separated by 61 nucleotides DVU2599: DVU2599 - hypothetical protein (TIGR), at 2,720,598 to 2,721,041 DVU2599 DVU2600: DVU2600 - hypothetical protein (TIGR), at 2,721,182 to 2,721,583 DVU2600 DORF19137: DORF19137 - SEED: FIG00602269: hypothetical protein, at 2,721,610 to 2,722,524 DORF19137 DVU2602: DVU2602 - conserved domain protein (TIGR), at 2,722,536 to 2,723,219 DVU2602 DVU2603: DVU2603 - hypothetical protein (TIGR), at 2,723,281 to 2,723,688 DVU2603 Position (kb) 2721 2722 2723Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 2720.610 kb on + strandat 2720.611 kb on + strandat 2720.693 kb on + strand, within DVU2599at 2720.708 kb on + strand, within DVU2599at 2720.717 kb on + strand, within DVU2599at 2720.741 kb on + strand, within DVU2599at 2720.749 kb on - strand, within DVU2599at 2720.766 kb on - strand, within DVU2599at 2720.847 kb on + strand, within DVU2599at 2720.860 kb on - strand, within DVU2599at 2720.934 kb on - strand, within DVU2599at 2720.941 kb on + strand, within DVU2599at 2721.026 kb on + strandat 2721.026 kb on + strandat 2721.026 kb on + strandat 2721.026 kb on + strandat 2721.034 kb on - strandat 2721.034 kb on - strandat 2721.034 kb on - strandat 2721.034 kb on - strandat 2721.085 kb on - strandat 2721.131 kb on - strandat 2721.134 kb on + strandat 2721.147 kb on - strandat 2721.163 kb on + strandat 2721.171 kb on - strandat 2721.171 kb on - strandat 2721.171 kb on - strandat 2721.195 kb on + strandat 2721.196 kb on - strandat 2721.208 kb on + strandat 2721.231 kb on + strand, within DVU2600at 2721.351 kb on - strand, within DVU2600at 2721.379 kb on + strand, within DVU2600at 2721.462 kb on + strand, within DVU2600at 2721.503 kb on + strand, within DVU2600at 2721.503 kb on + strand, within DVU2600at 2721.610 kb on + strandat 2721.618 kb on - strandat 2721.618 kb on - strandat 2721.618 kb on - strandat 2721.618 kb on - strandat 2721.618 kb on - strandat 2721.620 kb on + strandat 2721.646 kb on + strandat 2721.672 kb on - strandat 2721.699 kb on + strandat 2721.816 kb on + strand, within DORF19137at 2721.934 kb on + strand, within DORF19137at 2721.943 kb on + strand, within DORF19137at 2721.943 kb on + strand, within DORF19137at 2721.968 kb on + strand, within DORF19137at 2722.000 kb on + strand, within DORF19137at 2722.025 kb on - strand, within DORF19137at 2722.039 kb on - strand, within DORF19137at 2722.039 kb on - strand, within DORF19137at 2722.039 kb on - strand, within DORF19137at 2722.041 kb on - strand, within DORF19137at 2722.151 kb on - strand, within DORF19137at 2722.200 kb on - strand, within DORF19137at 2722.207 kb on - strand, within DORF19137at 2722.207 kb on - strand, within DORF19137at 2722.293 kb on + strand, within DORF19137at 2722.306 kb on - strand, within DORF19137at 2722.320 kb on + strand, within DORF19137at 2722.342 kb on + strand, within DORF19137at 2722.342 kb on + strand, within DORF19137at 2722.409 kb on - strand, within DORF19137at 2722.514 kb on + strandat 2722.575 kb on + strandat 2722.584 kb on + strandat 2722.630 kb on - strand, within DVU2602at 2722.807 kb on + strand, within DVU2602at 2722.845 kb on + strand, within DVU2602at 2722.850 kb on + strand, within DVU2602at 2722.871 kb on - strand, within DVU2602at 2722.954 kb on + strand, within DVU2602at 2722.962 kb on - strand, within DVU2602at 2723.049 kb on - strand, within DVU2602at 2723.099 kb on + strand, within DVU2602at 2723.107 kb on - strand, within DVU2602at 2723.113 kb on - strand, within DVU2602at 2723.120 kb on + strand, within DVU2602at 2723.128 kb on - strand, within DVU2602at 2723.133 kb on - strand, within DVU2602at 2723.148 kb on - strand, within DVU2602at 2723.234 kb on - strandat 2723.241 kb on + strandat 2723.266 kb on - strandat 2723.272 kb on + strandat 2723.277 kb on + strandat 2723.419 kb on + strand, within DVU2603at 2723.435 kb on - strand, within DVU2603at 2723.481 kb on - strand, within DVU2603

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
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2,720,610 + -1.5
2,720,611 + -0.3
2,720,693 + DVU2599 0.21 +1.0
2,720,708 + DVU2599 0.25 -2.1
2,720,717 + DVU2599 0.27 -0.6
2,720,741 + DVU2599 0.32 -0.0
2,720,749 - DVU2599 0.34 -0.9
2,720,766 - DVU2599 0.38 -0.5
2,720,847 + DVU2599 0.56 -1.2
2,720,860 - DVU2599 0.59 -0.0
2,720,934 - DVU2599 0.76 -3.3
2,720,941 + DVU2599 0.77 -0.2
2,721,026 + -0.6
2,721,026 + +0.1
2,721,026 + +0.1
2,721,026 + +0.8
2,721,034 - -4.4
2,721,034 - -0.4
2,721,034 - -0.0
2,721,034 - -0.2
2,721,085 - +0.0
2,721,131 - -1.9
2,721,134 + -0.5
2,721,147 - +1.5
2,721,163 + +0.4
2,721,171 - -0.4
2,721,171 - -0.8
2,721,171 - +0.1
2,721,195 + -0.9
2,721,196 - -0.0
2,721,208 + -0.8
2,721,231 + DVU2600 0.12 -0.9
2,721,351 - DVU2600 0.42 +0.3
2,721,379 + DVU2600 0.49 +0.0
2,721,462 + DVU2600 0.70 -0.9
2,721,503 + DVU2600 0.80 -2.7
2,721,503 + DVU2600 0.80 +0.3
2,721,610 + +0.8
2,721,618 - -0.9
2,721,618 - -0.1
2,721,618 - +0.0
2,721,618 - +1.4
2,721,618 - -0.3
2,721,620 + -1.3
2,721,646 + +0.7
2,721,672 - -0.2
2,721,699 + -0.9
2,721,816 + DORF19137 0.23 -0.2
2,721,934 + DORF19137 0.35 +1.3
2,721,943 + DORF19137 0.36 +0.6
2,721,943 + DORF19137 0.36 -0.1
2,721,968 + DORF19137 0.39 +0.6
2,722,000 + DORF19137 0.43 +0.0
2,722,025 - DORF19137 0.45 -0.2
2,722,039 - DORF19137 0.47 -1.0
2,722,039 - DORF19137 0.47 -1.1
2,722,039 - DORF19137 0.47 -0.2
2,722,041 - DORF19137 0.47 +0.1
2,722,151 - DORF19137 0.59 -0.4
2,722,200 - DORF19137 0.64 +0.6
2,722,207 - DORF19137 0.65 +0.2
2,722,207 - DORF19137 0.65 +1.3
2,722,293 + DORF19137 0.75 -0.5
2,722,306 - DORF19137 0.76 +0.1
2,722,320 + DORF19137 0.78 +0.8
2,722,342 + DORF19137 0.80 +2.7
2,722,342 + DORF19137 0.80 +0.1
2,722,409 - DORF19137 0.87 -0.5
2,722,514 + -0.8
2,722,575 + +0.1
2,722,584 + -0.5
2,722,630 - DVU2602 0.14 +0.8
2,722,807 + DVU2602 0.40 -0.4
2,722,845 + DVU2602 0.45 -0.4
2,722,850 + DVU2602 0.46 -6.3
2,722,871 - DVU2602 0.49 +1.6
2,722,954 + DVU2602 0.61 +0.3
2,722,962 - DVU2602 0.62 -0.3
2,723,049 - DVU2602 0.75 -0.4
2,723,099 + DVU2602 0.82 -0.2
2,723,107 - DVU2602 0.83 -0.6
2,723,113 - DVU2602 0.84 -1.5
2,723,120 + DVU2602 0.85 -0.6
2,723,128 - DVU2602 0.87 +0.6
2,723,133 - DVU2602 0.87 -0.5
2,723,148 - DVU2602 0.89 +1.0
2,723,234 - +0.8
2,723,241 + +0.2
2,723,266 - -0.9
2,723,272 + +1.3
2,723,277 + +0.2
2,723,419 + DVU2603 0.34 -2.1
2,723,435 - DVU2603 0.38 -1.9
2,723,481 - DVU2603 0.49 -0.3

Or see this region's nucleotide sequence