Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4841 and Psyr_4842 are separated by 528 nucleotides Psyr_4842 and Psyr_4843 are separated by 21 nucleotides Psyr_4843 and Psyr_4844 are separated by 142 nucleotides
Psyr_4841: Psyr_4841 - Prolipoprotein diacylglyceryl transferase, at 5,746,380 to 5,747,192
_4841
Psyr_4842: Psyr_4842 - Phosphoenolpyruvate-protein phosphotransferase, at 5,747,721 to 5,750,000
_4842
Psyr_4843: Psyr_4843 - NUDIX hydrolase, at 5,750,022 to 5,750,501
_4843
Psyr_4844: Psyr_4844 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 5,750,644 to 5,751,300
_4844
Position (kb) 5747
5748
5749
5750
5751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5747.334 kb on - strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.387 kb on + strand at 5747.387 kb on + strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.419 kb on + strand at 5747.419 kb on + strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.446 kb on + strand at 5747.447 kb on - strand at 5747.447 kb on - strand at 5747.474 kb on - strand at 5747.520 kb on + strand at 5747.520 kb on + strand at 5747.521 kb on - strand at 5747.535 kb on + strand at 5747.535 kb on + strand at 5747.536 kb on - strand at 5747.536 kb on - strand at 5747.536 kb on - strand at 5747.616 kb on - strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.666 kb on - strand at 5747.666 kb on - strand at 5747.677 kb on + strand at 5747.678 kb on - strand at 5747.712 kb on + strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.715 kb on + strand at 5747.716 kb on - strand at 5747.716 kb on - strand at 5747.722 kb on + strand at 5748.056 kb on - strand, within Psyr_4842 at 5748.056 kb on - strand, within Psyr_4842 at 5748.107 kb on - strand, within Psyr_4842 at 5748.107 kb on - strand, within Psyr_4842 at 5748.172 kb on + strand, within Psyr_4842 at 5748.198 kb on + strand, within Psyr_4842 at 5748.448 kb on + strand, within Psyr_4842 at 5748.448 kb on + strand, within Psyr_4842 at 5748.449 kb on - strand, within Psyr_4842 at 5748.449 kb on - strand, within Psyr_4842 at 5749.057 kb on + strand, within Psyr_4842 at 5749.058 kb on - strand, within Psyr_4842 at 5749.058 kb on - strand, within Psyr_4842 at 5749.111 kb on + strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.246 kb on + strand, within Psyr_4842 at 5749.246 kb on + strand, within Psyr_4842 at 5749.247 kb on - strand, within Psyr_4842 at 5749.247 kb on - strand, within Psyr_4842 at 5749.630 kb on - strand, within Psyr_4842 at 5749.630 kb on - strand, within Psyr_4842 at 5749.708 kb on + strand, within Psyr_4842 at 5749.879 kb on + strand at 5749.880 kb on - strand at 5749.928 kb on + strand at 5749.965 kb on - strand at 5749.965 kb on - strand at 5749.991 kb on + strand at 5749.992 kb on - strand at 5750.035 kb on - strand at 5750.117 kb on - strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.474 kb on + strand at 5750.474 kb on + strand at 5750.569 kb on + strand at 5750.569 kb on + strand at 5750.570 kb on - strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.625 kb on + strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.637 kb on + strand at 5750.638 kb on - strand at 5750.643 kb on + strand at 5750.657 kb on + strand at 5750.658 kb on - strand at 5750.658 kb on - strand at 5750.713 kb on + strand, within Psyr_4844 at 5750.713 kb on + strand, within Psyr_4844 at 5750.750 kb on - strand, within Psyr_4844 at 5750.773 kb on + strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.782 kb on + strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 5,747,334 - -0.2 5,747,360 + +1.5 5,747,360 + -1.6 5,747,360 + +0.7 5,747,360 + -0.4 5,747,360 + +0.6 5,747,360 + -1.3 5,747,360 + +0.8 5,747,360 + +1.5 5,747,362 + +0.8 5,747,362 + -0.6 5,747,362 + -1.2 5,747,362 + -0.8 5,747,362 + +0.2 5,747,362 + +0.1 5,747,362 + -0.0 5,747,362 + -2.0 5,747,362 + +1.3 5,747,362 + -0.7 5,747,362 + -0.6 5,747,362 + -1.2 5,747,362 + +0.1 5,747,363 - +0.7 5,747,363 - +0.4 5,747,363 - +0.3 5,747,363 - +1.2 5,747,363 - +0.3 5,747,363 - +1.0 5,747,363 - +0.5 5,747,363 - +0.5 5,747,363 - -0.1 5,747,363 - -2.2 5,747,363 - -0.3 5,747,363 - -2.2 5,747,363 - +0.0 5,747,364 + -1.2 5,747,364 + +0.6 5,747,364 + +1.0 5,747,364 + -0.7 5,747,364 + +1.2 5,747,364 + +0.2 5,747,364 + +0.9 5,747,364 + +0.0 5,747,364 + +1.1 5,747,364 + +0.6 5,747,364 + -0.8 5,747,364 + -1.3 5,747,364 + -0.3 5,747,364 + -1.7 5,747,364 + -0.6 5,747,364 + -1.3 5,747,365 - -0.1 5,747,365 - +1.7 5,747,365 - -1.0 5,747,365 - -0.6 5,747,365 - +0.7 5,747,365 - +0.5 5,747,365 - +0.5 5,747,365 - -0.1 5,747,365 - -1.7 5,747,365 - +0.2 5,747,365 - +0.4 5,747,387 + -0.2 5,747,387 + +0.8 5,747,388 - +1.8 5,747,388 - +1.5 5,747,388 - +0.3 5,747,388 - -0.3 5,747,388 - -0.6 5,747,419 + +0.6 5,747,419 + -0.8 5,747,420 - -0.1 5,747,420 - -0.1 5,747,420 - -0.7 5,747,420 - +2.0 5,747,420 - -0.3 5,747,420 - +0.4 5,747,446 + -0.0 5,747,447 - +0.2 5,747,447 - +0.5 5,747,474 - -1.7 5,747,520 + +0.4 5,747,520 + +1.1 5,747,521 - +0.6 5,747,535 + +1.0 5,747,535 + -0.1 5,747,536 - -0.7 5,747,536 - +0.2 5,747,536 - -1.3 5,747,616 - -1.0 5,747,662 + -0.5 5,747,662 + -1.1 5,747,662 + +1.1 5,747,662 + +1.4 5,747,662 + -0.7 5,747,662 + -2.9 5,747,662 + +0.8 5,747,665 + +1.1 5,747,665 + +1.3 5,747,665 + +0.7 5,747,665 + -0.6 5,747,666 - +1.0 5,747,666 - +0.3 5,747,677 + +0.6 5,747,678 - +0.6 5,747,712 + +0.0 5,747,713 - +0.5 5,747,713 - +1.8 5,747,713 - +0.3 5,747,713 - -0.0 5,747,715 + +0.6 5,747,716 - +0.7 5,747,716 - +2.8 5,747,722 + +1.1 5,748,056 - Psyr_4842 0.15 +0.1 5,748,056 - Psyr_4842 0.15 -1.2 5,748,107 - Psyr_4842 0.17 -2.7 5,748,107 - Psyr_4842 0.17 -0.9 5,748,172 + Psyr_4842 0.20 -0.2 5,748,198 + Psyr_4842 0.21 -1.2 5,748,448 + Psyr_4842 0.32 -1.0 5,748,448 + Psyr_4842 0.32 +0.7 5,748,449 - Psyr_4842 0.32 -1.9 5,748,449 - Psyr_4842 0.32 +3.5 5,749,057 + Psyr_4842 0.59 +1.6 5,749,058 - Psyr_4842 0.59 +0.9 5,749,058 - Psyr_4842 0.59 +0.8 5,749,111 + Psyr_4842 0.61 -2.5 5,749,112 - Psyr_4842 0.61 -1.3 5,749,112 - Psyr_4842 0.61 -1.9 5,749,112 - Psyr_4842 0.61 +1.1 5,749,112 - Psyr_4842 0.61 +0.1 5,749,112 - Psyr_4842 0.61 -1.2 5,749,112 - Psyr_4842 0.61 -1.2 5,749,246 + Psyr_4842 0.67 -1.6 5,749,246 + Psyr_4842 0.67 +0.9 5,749,247 - Psyr_4842 0.67 +1.1 5,749,247 - Psyr_4842 0.67 +0.5 5,749,630 - Psyr_4842 0.84 -0.6 5,749,630 - Psyr_4842 0.84 +0.7 5,749,708 + Psyr_4842 0.87 -2.4 5,749,879 + +1.3 5,749,880 - +1.0 5,749,928 + +1.0 5,749,965 - -0.5 5,749,965 - -3.0 5,749,991 + -0.7 5,749,992 - -1.2 5,750,035 - +0.3 5,750,117 - Psyr_4843 0.20 -0.0 5,750,301 + Psyr_4843 0.58 -0.7 5,750,301 + Psyr_4843 0.58 -2.0 5,750,301 + Psyr_4843 0.58 -1.4 5,750,301 + Psyr_4843 0.58 +0.3 5,750,301 + Psyr_4843 0.58 -0.2 5,750,301 + Psyr_4843 0.58 -1.6 5,750,301 + Psyr_4843 0.58 -2.2 5,750,301 + Psyr_4843 0.58 -1.7 5,750,301 + Psyr_4843 0.58 -1.8 5,750,301 + Psyr_4843 0.58 -1.5 5,750,301 + Psyr_4843 0.58 -0.2 5,750,301 + Psyr_4843 0.58 -2.4 5,750,302 - Psyr_4843 0.58 -0.8 5,750,302 - Psyr_4843 0.58 +2.3 5,750,302 - Psyr_4843 0.58 -0.8 5,750,462 + -1.0 5,750,462 + -0.7 5,750,462 + +0.4 5,750,462 + -0.8 5,750,474 + +1.0 5,750,474 + -1.0 5,750,569 + +0.1 5,750,569 + +0.4 5,750,570 - +1.7 5,750,577 + +0.4 5,750,577 + -0.0 5,750,577 + -0.9 5,750,577 + -0.1 5,750,577 + -0.8 5,750,577 + +0.6 5,750,577 + +1.3 5,750,577 + +0.6 5,750,577 + +0.1 5,750,578 - -0.7 5,750,578 - +0.3 5,750,578 - -0.4 5,750,578 - +4.4 5,750,578 - -0.5 5,750,625 + -0.5 5,750,626 - -2.7 5,750,626 - +0.3 5,750,626 - -0.6 5,750,626 - -2.1 5,750,637 + -0.1 5,750,638 - -1.6 5,750,643 + -1.9 5,750,657 + -1.9 5,750,658 - +1.0 5,750,658 - -1.8 5,750,713 + Psyr_4844 0.11 -1.8 5,750,713 + Psyr_4844 0.11 -2.7 5,750,750 - Psyr_4844 0.16 -0.3 5,750,773 + Psyr_4844 0.20 -2.2 5,750,774 - Psyr_4844 0.20 -0.7 5,750,774 - Psyr_4844 0.20 -0.9 5,750,782 + Psyr_4844 0.21 -1.6 5,750,783 - Psyr_4844 0.21 -1.6 5,750,783 - Psyr_4844 0.21 -1.6
Or see this region's nucleotide sequence