Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4782

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,669,509	+		Psyr_4781	0.83	-1.4
5,669,510	-		Psyr_4781	0.83	+0.0
5,669,662	+				-1.6
5,669,662	+				-0.3
5,669,662	+				+4.1
5,669,662	+				+0.9
5,669,662	+				-1.2
5,669,662	+				-1.5
5,669,662	+				+1.6
5,669,662	+				+0.1
5,669,662	+				+0.0
5,669,663	-				+1.6
5,669,663	-				+0.2
5,669,663	-				-1.2
5,669,663	-				-2.6
5,669,663	-				-2.4
5,669,663	-				-1.9
5,669,701	+				-0.7
5,669,701	+				-0.6
5,669,701	+				-1.3
5,669,841	+				+0.1
5,669,920	+				-1.3
5,669,920	+				-0.1
5,669,920	+				+0.7
5,669,921	-				-0.5
5,669,921	-				+0.0
5,669,921	-				+0.6
5,669,921	-				+1.3
5,669,967	+				+0.7
5,669,987	+				+1.0
5,669,987	+				+0.8
5,669,987	+				+1.6
5,669,988	-				+0.1
5,669,988	-				-1.5
5,669,988	-				-0.4
5,670,006	+				-0.3
5,670,006	+				-0.6
5,670,007	-				+0.3
5,670,028	+				-0.8
5,670,028	+				-0.3
5,670,031	-				+0.6
5,670,144	-				+1.0
5,670,144	-				+0.0
5,670,144	-				-0.1
5,670,146	+				+1.2
5,670,146	+				-0.0
5,670,146	+				-0.8
5,670,147	-				-2.6
5,670,147	-				-1.5
5,670,147	-				-1.2
5,670,147	-				+0.8
5,670,147	-				-1.0
5,670,147	-				+0.8
5,670,263	+		Psyr_4782	0.15	-0.7
5,670,263	+		Psyr_4782	0.15	-1.1
5,670,311	+		Psyr_4782	0.17	-0.5
5,670,312	-		Psyr_4782	0.17	+1.4
5,670,323	+		Psyr_4782	0.18	-1.5
5,670,326	+		Psyr_4782	0.18	-2.7
5,670,327	-		Psyr_4782	0.18	+0.7
5,670,456	-		Psyr_4782	0.24	-0.5
5,670,890	+		Psyr_4782	0.45	+1.8
5,670,890	+		Psyr_4782	0.45	+2.6
5,670,890	+		Psyr_4782	0.45	+0.7
5,670,890	+		Psyr_4782	0.45	+1.1
5,670,890	+		Psyr_4782	0.45	-1.1
5,670,890	+		Psyr_4782	0.45	+0.5
5,670,891	-		Psyr_4782	0.45	-0.9
5,670,959	+		Psyr_4782	0.49	+1.2
5,670,959	+		Psyr_4782	0.49	+2.6
5,670,959	+		Psyr_4782	0.49	+1.8
5,670,959	+		Psyr_4782	0.49	-0.3
5,670,959	+		Psyr_4782	0.49	+0.9
5,670,960	-		Psyr_4782	0.49	+0.1
5,670,960	-		Psyr_4782	0.49	-0.3
5,670,960	-		Psyr_4782	0.49	-1.1
5,670,960	-		Psyr_4782	0.49	+0.4
5,670,960	-		Psyr_4782	0.49	+0.5
5,671,067	+		Psyr_4782	0.54	+0.8
5,671,067	+		Psyr_4782	0.54	+0.9
5,671,067	+		Psyr_4782	0.54	-0.2
5,671,068	-		Psyr_4782	0.54	+1.5
5,671,068	-		Psyr_4782	0.54	-0.5
5,671,187	+		Psyr_4782	0.60	-1.6
5,671,283	+		Psyr_4782	0.64	-0.1
5,671,283	+		Psyr_4782	0.64	-0.7
5,671,283	+		Psyr_4782	0.64	-1.3
5,671,284	-		Psyr_4782	0.64	+2.3
5,671,284	-		Psyr_4782	0.64	+0.5
5,671,562	+		Psyr_4782	0.78	+0.1
5,671,562	+		Psyr_4782	0.78	-0.2
5,671,562	+		Psyr_4782	0.78	+2.3
5,671,563	-		Psyr_4782	0.78	-0.8
5,671,563	-		Psyr_4782	0.78	-0.9
5,671,563	-		Psyr_4782	0.78	+0.3
5,671,563	-		Psyr_4782	0.78	+1.3
5,671,563	-		Psyr_4782	0.78	+0.4
5,671,563	-		Psyr_4782	0.78	+1.6
5,671,605	+		Psyr_4782	0.80	+2.0
5,671,606	-		Psyr_4782	0.80	+0.4
5,671,883	+				-2.1
5,671,884	-				-0.1
5,671,884	-				+0.8
5,671,884	-				-1.3
5,671,884	-				-0.6
5,671,886	+				-1.5
5,671,886	+				-0.5
5,671,886	+				+0.6
5,671,886	+				-1.9
5,671,886	+				+2.4
5,671,887	-				-0.7
5,671,887	-				+1.6
5,671,887	-				+0.2
5,671,887	-				-0.1
5,671,887	-				-1.3
5,671,887	-				-1.3
5,671,887	-				-0.2
5,671,887	-				+0.8
5,672,087	+		Psyr_4783	0.10	+0.2
5,672,088	-		Psyr_4783	0.11	+1.3
5,672,174	+		Psyr_4783	0.27	+0.5
5,672,174	+		Psyr_4783	0.27	-0.3
5,672,174	+		Psyr_4783	0.27	+0.4
5,672,174	+		Psyr_4783	0.27	-0.2
5,672,174	+		Psyr_4783	0.27	-0.7
5,672,174	+		Psyr_4783	0.27	-1.1
5,672,175	-		Psyr_4783	0.27	-0.1
5,672,175	-		Psyr_4783	0.27	-1.0
5,672,175	-		Psyr_4783	0.27	-0.3
5,672,175	-		Psyr_4783	0.27	-0.6
5,672,175	-		Psyr_4783	0.27	+0.8
5,672,175	-		Psyr_4783	0.27	-2.9
5,672,175	-		Psyr_4783	0.27	+0.7
5,672,175	-		Psyr_4783	0.27	+0.3
5,672,207	+		Psyr_4783	0.33	-1.3
5,672,207	+		Psyr_4783	0.33	+0.5
5,672,207	+		Psyr_4783	0.33	-0.5
5,672,208	-		Psyr_4783	0.33	+1.6
5,672,208	-		Psyr_4783	0.33	+1.1
5,672,208	-		Psyr_4783	0.33	-0.1
5,672,208	-		Psyr_4783	0.33	+1.5
5,672,312	+				-0.3
5,672,312	+		Psyr_4783	0.53	-1.0
5,672,312	+		Psyr_4783	0.53	+0.5
5,672,312	+		Psyr_4783	0.53	+1.8
5,672,313	-		Psyr_4783	0.53	-3.0
5,672,313	-		Psyr_4783	0.53	+0.3
5,672,313	-		Psyr_4783	0.53	-0.3
5,672,313	-		Psyr_4783	0.53	+0.8
5,672,313	-		Psyr_4783	0.53	+3.6
5,672,313	-		Psyr_4783	0.53	-0.1
5,672,399	+		Psyr_4783	0.69	-0.7
5,672,399	+		Psyr_4783	0.69	-0.7
5,672,399	+		Psyr_4783	0.69	-0.1
5,672,399	+		Psyr_4783	0.69	-1.7
5,672,400	-		Psyr_4783	0.69	+0.5
5,672,400	-		Psyr_4783	0.69	+0.3
5,672,480	+		Psyr_4783	0.84	+0.0
5,672,480	+		Psyr_4783	0.84	-0.9
5,672,480	+		Psyr_4783	0.84	-0.7
5,672,481	-		Psyr_4783	0.85	+0.5
5,672,481	-		Psyr_4783	0.85	+1.3
5,672,590	+				+0.1
5,672,635	-				+0.5
5,672,635	-				+0.5
5,672,635	-				-0.3
5,672,843	+		Psyr_4784	0.20	+0.5
5,672,843	+		Psyr_4784	0.20	+1.8
5,672,844	-		Psyr_4784	0.20	-0.7
5,672,884	-		Psyr_4784	0.24	-1.0
5,672,924	+		Psyr_4784	0.28	-0.1
5,672,924	+		Psyr_4784	0.28	+0.1
5,672,924	+		Psyr_4784	0.28	-1.4
5,672,924	+		Psyr_4784	0.28	+0.4
5,672,924	+		Psyr_4784	0.28	-0.1
5,672,924	+		Psyr_4784	0.28	-0.3
5,672,925	-		Psyr_4784	0.28	-0.0
5,672,925	-		Psyr_4784	0.28	+0.0
5,672,925	-		Psyr_4784	0.28	+1.7
5,672,925	-		Psyr_4784	0.28	+1.5
5,672,943	-		Psyr_4784	0.30	-0.6