Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3139

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,764,328	+		Psyr_3138	0.46	-1.5
3,764,329	-		Psyr_3138	0.47	+1.3
3,764,444	+		Psyr_3138	0.56	-0.9
3,764,445	-		Psyr_3138	0.56	-1.7
3,764,609	+		Psyr_3138	0.70	+0.1
3,764,685	-		Psyr_3138	0.76	+0.5
3,764,715	+		Psyr_3138	0.79	+1.4
3,764,810	+		Psyr_3138	0.87	-1.3
3,764,810	+		Psyr_3138	0.87	-0.5
3,764,810	+		Psyr_3138	0.87	-1.2
3,764,810	+		Psyr_3138	0.87	+0.9
3,764,810	+		Psyr_3138	0.87	+0.1
3,764,810	+		Psyr_3138	0.87	+1.6
3,764,810	+		Psyr_3138	0.87	-2.2
3,764,811	-		Psyr_3138	0.87	+0.9
3,764,811	-		Psyr_3138	0.87	-2.3
3,764,821	+		Psyr_3138	0.88	+1.9
3,764,822	-		Psyr_3138	0.88	-1.4
3,764,966	+				+0.3
3,765,050	+				-0.4
3,765,050	+				+1.2
3,765,050	+				-1.7
3,765,102	+				+0.7
3,765,102	+				-0.3
3,765,102	+				-2.1
3,765,103	-				+1.2
3,765,103	-				+0.7
3,765,103	-				-0.3
3,765,103	-				+0.4
3,765,103	-				+0.2
3,765,276	+		Psyr_3139	0.11	-2.3
3,765,276	+		Psyr_3139	0.11	+1.8
3,765,276	+		Psyr_3139	0.11	+1.3
3,765,276	+		Psyr_3139	0.11	-0.7
3,765,276	+		Psyr_3139	0.11	+0.7
3,765,277	-		Psyr_3139	0.11	-0.6
3,765,277	-		Psyr_3139	0.11	+0.5
3,765,277	-		Psyr_3139	0.11	+0.7
3,765,277	-		Psyr_3139	0.11	-0.9
3,765,277	-		Psyr_3139	0.11	+2.2
3,765,295	+		Psyr_3139	0.13	+1.2
3,765,330	+		Psyr_3139	0.18	-0.1
3,765,397	+		Psyr_3139	0.27	+1.6
3,765,397	+		Psyr_3139	0.27	+0.6
3,765,397	+		Psyr_3139	0.27	+0.8
3,765,397	+		Psyr_3139	0.27	-0.3
3,765,397	+		Psyr_3139	0.27	+1.3
3,765,398	-		Psyr_3139	0.27	+0.5
3,765,464	+		Psyr_3139	0.36	-1.1
3,765,465	-		Psyr_3139	0.36	-1.1
3,765,602	+		Psyr_3139	0.54	+0.2
3,765,602	+		Psyr_3139	0.54	-2.7
3,765,602	+		Psyr_3139	0.54	-0.8
3,765,602	+		Psyr_3139	0.54	-1.3
3,765,602	+		Psyr_3139	0.54	+0.8
3,765,602	+		Psyr_3139	0.54	+1.3
3,765,602	+		Psyr_3139	0.54	+0.6
3,765,602	+		Psyr_3139	0.54	-1.9
3,765,602	+		Psyr_3139	0.54	+1.2
3,765,602	+		Psyr_3139	0.54	-0.2
3,765,602	+		Psyr_3139	0.54	+0.8
3,765,602	+		Psyr_3139	0.54	-0.2
3,765,602	+		Psyr_3139	0.54	+0.1
3,765,602	+		Psyr_3139	0.54	+0.5
3,765,602	+		Psyr_3139	0.54	+0.3
3,765,603	-		Psyr_3139	0.54	-1.9
3,765,603	-		Psyr_3139	0.54	+0.1
3,765,603	-		Psyr_3139	0.54	-0.2
3,765,603	-		Psyr_3139	0.54	+0.8
3,765,603	-		Psyr_3139	0.54	-0.7
3,765,603	-		Psyr_3139	0.54	-0.6
3,765,603	-		Psyr_3139	0.54	-0.9
3,765,603	-		Psyr_3139	0.54	+1.4
3,765,603	-		Psyr_3139	0.54	+1.2
3,765,603	-		Psyr_3139	0.54	-0.6
3,765,603	-		Psyr_3139	0.54	+0.2
3,765,603	-		Psyr_3139	0.54	+0.7
3,765,603	-		Psyr_3139	0.54	-0.6
3,765,603	-		Psyr_3139	0.54	+0.3
3,765,603	-		Psyr_3139	0.54	+1.5
3,765,603	-		Psyr_3139	0.54	+0.4
3,765,603	-		Psyr_3139	0.54	+0.0
3,765,603	-		Psyr_3139	0.54	-0.1
3,765,603	-		Psyr_3139	0.54	-3.1
3,765,603	-		Psyr_3139	0.54	+0.8
3,765,603	-		Psyr_3139	0.54	+0.5
3,765,606	+		Psyr_3139	0.55	+0.1
3,765,606	+		Psyr_3139	0.55	-0.3
3,765,606	+		Psyr_3139	0.55	+0.6
3,765,606	+				-1.3
3,765,606	+		Psyr_3139	0.55	+0.9
3,765,607	-		Psyr_3139	0.55	+1.4
3,765,669	+		Psyr_3139	0.63	+1.9
3,765,940	+				-0.3
3,765,940	+				+0.1
3,765,941	-				+1.3
3,765,941	-				+0.1
3,765,941	-				+1.7
3,765,941	-				-0.2
3,765,941	-				+0.4
3,765,941	-				-1.3
3,765,941	-				+2.6
3,765,941	-				+0.1
3,765,983	+				+0.2
3,765,983	+				+1.1
3,765,983	+				+0.7
3,765,983	+				-0.9
3,765,984	-				+0.5
3,765,984	-				-0.5
3,765,984	-				-0.6
3,765,984	-				-0.6
3,766,065	+		Psyr_3140	0.11	-1.3
3,766,066	-		Psyr_3140	0.11	+0.6
3,766,066	-		Psyr_3140	0.11	-0.9
3,766,066	-		Psyr_3140	0.11	-0.6
3,766,073	+		Psyr_3140	0.12	+1.7
3,766,073	+		Psyr_3140	0.12	+0.3
3,766,073	+		Psyr_3140	0.12	-1.3
3,766,073	+		Psyr_3140	0.12	-0.2
3,766,073	+		Psyr_3140	0.12	+0.4
3,766,073	+				-1.3
3,766,073	+		Psyr_3140	0.12	+1.1
3,766,073	+		Psyr_3140	0.12	-1.7
3,766,073	+		Psyr_3140	0.12	+0.8
3,766,073	+		Psyr_3140	0.12	+0.2
3,766,074	-		Psyr_3140	0.12	-0.7
3,766,074	-		Psyr_3140	0.12	+1.0
3,766,074	-		Psyr_3140	0.12	+1.1
3,766,074	-		Psyr_3140	0.12	+0.1
3,766,074	-		Psyr_3140	0.12	-2.3
3,766,074	-		Psyr_3140	0.12	-0.3
3,766,074	-		Psyr_3140	0.12	-0.0
3,766,074	-		Psyr_3140	0.12	+0.5
3,766,074	-		Psyr_3140	0.12	-1.7
3,766,074	-		Psyr_3140	0.12	-0.6
3,766,131	+		Psyr_3140	0.20	-0.3
3,766,131	+		Psyr_3140	0.20	+0.7
3,766,169	+		Psyr_3140	0.25	-1.1
3,766,170	-		Psyr_3140	0.25	+0.2
3,766,170	-		Psyr_3140	0.25	-1.1
3,766,287	+		Psyr_3140	0.42	-0.3
3,766,288	-		Psyr_3140	0.42	+1.4
3,766,288	-		Psyr_3140	0.42	+0.4
3,766,423	-		Psyr_3140	0.60	-0.8
3,766,458	+		Psyr_3140	0.65	-1.1
3,766,458	+		Psyr_3140	0.65	+1.8
3,766,458	+		Psyr_3140	0.65	+0.3
3,766,458	+		Psyr_3140	0.65	+0.3
3,766,459	-		Psyr_3140	0.65	+1.7
3,766,459	-		Psyr_3140	0.65	+1.4
3,766,459	-		Psyr_3140	0.65	+0.7
3,766,500	+		Psyr_3140	0.71	-0.3
3,766,500	+		Psyr_3140	0.71	+0.6
3,766,500	+		Psyr_3140	0.71	-0.6
3,766,500	+		Psyr_3140	0.71	+0.7
3,766,500	+		Psyr_3140	0.71	+0.5
3,766,500	+		Psyr_3140	0.71	+1.0
3,766,500	+		Psyr_3140	0.71	+0.2
3,766,500	+		Psyr_3140	0.71	-1.3
3,766,500	+		Psyr_3140	0.71	+0.4
3,766,500	+		Psyr_3140	0.71	-0.0
3,766,500	+		Psyr_3140	0.71	+0.7
3,766,500	+		Psyr_3140	0.71	+3.5
3,766,500	+		Psyr_3140	0.71	-0.1
3,766,501	-		Psyr_3140	0.71	+1.4
3,766,501	-		Psyr_3140	0.71	+1.1
3,766,501	-		Psyr_3140	0.71	+0.8
3,766,501	-		Psyr_3140	0.71	+1.1
3,766,501	-		Psyr_3140	0.71	+0.3
3,766,501	-		Psyr_3140	0.71	-0.3
3,766,501	-		Psyr_3140	0.71	+0.3
3,766,501	-		Psyr_3140	0.71	+0.4
3,766,501	-		Psyr_3140	0.71	+1.0
3,766,501	-		Psyr_3140	0.71	-2.4
3,766,501	-		Psyr_3140	0.71	+0.9
3,766,501	-		Psyr_3140	0.71	+0.7
3,766,501	-		Psyr_3140	0.71	-1.7
3,766,501	-		Psyr_3140	0.71	+0.1
3,766,501	-		Psyr_3140	0.71	+1.2
3,766,501	-		Psyr_3140	0.71	-0.8
3,766,501	-		Psyr_3140	0.71	-2.6
3,766,501	-		Psyr_3140	0.71	-0.5
3,766,501	-		Psyr_3140	0.71	-0.8
3,766,501	-		Psyr_3140	0.71	-1.7
3,766,506	+		Psyr_3140	0.72	+0.0
3,766,506	+		Psyr_3140	0.72	-1.5
3,766,507	-		Psyr_3140	0.72	+0.4
3,766,685	+				-0.3
3,766,686	-				-0.0
3,766,936	-				-0.2