Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1425

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,612,002	+		Psyr_1423	0.44	-2.5
1,612,002	+		Psyr_1423	0.44	-0.1
1,612,002	+		Psyr_1423	0.44	-0.2
1,612,003	-		Psyr_1423	0.44	-0.7
1,612,003	-		Psyr_1423	0.44	+1.7
1,612,003	-		Psyr_1423	0.44	-2.8
1,612,012	-		Psyr_1423	0.45	-0.6
1,612,012	-		Psyr_1423	0.45	-1.8
1,612,032	-		Psyr_1423	0.48	-0.9
1,612,032	-		Psyr_1423	0.48	+0.5
1,612,273	-		Psyr_1423	0.83	+1.3
1,612,273	-		Psyr_1423	0.83	+2.1
1,612,286	+		Psyr_1423	0.85	+0.1
1,612,286	+		Psyr_1423	0.85	+0.5
1,612,286	+		Psyr_1423	0.85	+1.1
1,612,287	-		Psyr_1423	0.85	+0.6
1,612,287	-		Psyr_1423	0.85	+0.6
1,612,294	+		Psyr_1423	0.86	+1.2
1,612,491	-				+0.4
1,612,514	-				+1.1
1,612,605	+		Psyr_1424	0.23	-0.1
1,612,605	+		Psyr_1424	0.23	+1.2
1,612,628	-		Psyr_1424	0.28	-0.8
1,612,781	+		Psyr_1424	0.63	+0.6
1,612,848	-		Psyr_1424	0.79	+1.6
1,612,911	+				+0.7
1,612,911	+				+0.8
1,612,911	+				+2.0
1,612,911	+				+0.2
1,612,911	+				+1.1
1,612,911	+				-1.4
1,612,911	+				+1.9
1,612,911	+				-1.1
1,612,911	+				-0.9
1,612,911	+				+0.4
1,612,976	-				-1.2
1,612,976	-				+0.0
1,612,976	-				+1.3
1,612,976	-				+0.7
1,613,104	+		Psyr_1425	0.14	-0.5
1,613,161	+		Psyr_1425	0.18	+1.1
1,613,161	+		Psyr_1425	0.18	+0.9
1,613,161	+		Psyr_1425	0.18	-1.4
1,613,161	+		Psyr_1425	0.18	+0.6
1,613,161	+		Psyr_1425	0.18	-0.9
1,613,161	+		Psyr_1425	0.18	+0.5
1,613,161	+		Psyr_1425	0.18	+0.3
1,613,162	-		Psyr_1425	0.18	+0.8
1,613,162	-		Psyr_1425	0.18	+1.1
1,613,162	-		Psyr_1425	0.18	-0.0
1,613,162	-		Psyr_1425	0.18	+0.0
1,613,162	-		Psyr_1425	0.18	+0.6
1,613,162	-		Psyr_1425	0.18	-1.5
1,613,164	-		Psyr_1425	0.19	-0.6
1,613,171	-		Psyr_1425	0.19	+0.9
1,613,233	+		Psyr_1425	0.24	-2.1
1,613,233	+		Psyr_1425	0.24	+0.0
1,613,233	+		Psyr_1425	0.24	-0.3
1,613,233	+		Psyr_1425	0.24	-1.0
1,613,234	-		Psyr_1425	0.24	+0.4
1,613,234	-		Psyr_1425	0.24	+0.4
1,613,234	-		Psyr_1425	0.24	+0.8
1,613,319	+		Psyr_1425	0.31	+0.9
1,613,319	+		Psyr_1425	0.31	+0.7
1,613,320	-		Psyr_1425	0.31	+0.8
1,613,320	-		Psyr_1425	0.31	+0.3
1,613,320	-		Psyr_1425	0.31	-2.6
1,613,320	-		Psyr_1425	0.31	-0.4
1,613,320	-		Psyr_1425	0.31	-1.4
1,613,394	+		Psyr_1425	0.36	-1.6
1,613,394	+		Psyr_1425	0.36	+1.2
1,613,394	+		Psyr_1425	0.36	-0.1
1,613,412	+		Psyr_1425	0.38	+0.7
1,613,427	-		Psyr_1425	0.39	+0.4
1,613,427	-		Psyr_1425	0.39	-0.2
1,613,467	-		Psyr_1425	0.42	+1.2
1,613,470	-		Psyr_1425	0.42	+0.7
1,613,526	+		Psyr_1425	0.47	+1.2
1,613,526	+		Psyr_1425	0.47	-2.4
1,613,526	+		Psyr_1425	0.47	+1.6
1,613,527	-		Psyr_1425	0.47	+0.2
1,613,722	-		Psyr_1425	0.62	+1.1
1,613,743	+		Psyr_1425	0.64	+0.8
1,613,743	+		Psyr_1425	0.64	-0.9
1,613,743	+		Psyr_1425	0.64	-0.2
1,613,743	+		Psyr_1425	0.64	+0.8
1,613,743	+		Psyr_1425	0.64	-0.1
1,613,743	+		Psyr_1425	0.64	+0.6
1,613,743	+		Psyr_1425	0.64	-0.1
1,613,744	-		Psyr_1425	0.64	+1.9
1,613,744	-		Psyr_1425	0.64	+0.1
1,613,744	-		Psyr_1425	0.64	-1.1
1,613,744	-		Psyr_1425	0.64	-1.4
1,613,744	-		Psyr_1425	0.64	+0.6
1,613,744	-		Psyr_1425	0.64	-0.3
1,613,744	-		Psyr_1425	0.64	-1.6
1,613,744	-		Psyr_1425	0.64	-0.9
1,613,744	-		Psyr_1425	0.64	-1.4
1,613,744	-		Psyr_1425	0.64	+2.0
1,613,845	+		Psyr_1425	0.72	+1.1
1,613,845	+		Psyr_1425	0.72	+1.3
1,613,845	+		Psyr_1425	0.72	+0.6
1,613,846	-		Psyr_1425	0.72	+0.8
1,613,846	-		Psyr_1425	0.72	+0.7
1,613,846	-		Psyr_1425	0.72	+1.5
1,613,953	+		Psyr_1425	0.80	+1.2
1,614,004	-		Psyr_1425	0.84	-1.4
1,614,075	+		Psyr_1425	0.90	+0.7
1,614,099	-				+1.2
1,614,099	-				+0.2
1,614,135	+				-0.6
1,614,163	+				+1.6
1,614,165	+				+1.1
1,614,165	+				-0.2
1,614,165	+				+0.3
1,614,166	-				-0.1
1,614,166	-				-0.6
1,614,216	+				+0.8
1,614,217	-				-1.4
1,614,240	+				-2.9
1,614,240	+				-1.1
1,614,241	-				+0.2
1,614,241	-				+0.3
1,614,241	-				-0.4
1,614,241	-				-0.2
1,614,245	+				-1.1
1,614,246	-				+0.6
1,614,246	-				-1.1
1,614,246	-				-2.8
1,614,303	+				-0.9
1,614,345	-				+0.0
1,614,370	+				+0.3
1,614,371	-				-0.5
1,614,371	-				-0.1
1,614,374	+				-1.6
1,614,374	+				+1.3
1,614,374	+				-1.3
1,614,374	+				-0.8
1,614,374	+				+1.0
1,614,374	+				+0.2
1,614,375	-				-0.1
1,614,375	-				+0.6
1,614,375	-				+0.6
1,614,375	-				+1.9
1,614,375	-				+0.2
1,614,375	-				+0.4
1,614,375	-				-0.6
1,614,381	-				-1.3
1,614,382	+				+0.9
1,614,400	+				-0.2
1,614,400	+				+1.2
1,614,401	-				-2.2
1,614,408	-				-2.1
1,614,526	+				+0.2
1,614,526	+				+2.2
1,614,526	+				-0.6
1,614,526	+				-0.5
1,614,526	+				-0.8
1,614,526	+				+0.4
1,614,526	+				+0.6
1,614,526	+				-0.6
1,614,526	+				+0.4
1,614,526	+				-1.2
1,614,526	+				+1.5
1,614,526	+				-1.1
1,614,526	+				-2.1
1,614,527	-				-0.1
1,614,527	-				+1.1
1,614,527	-				-0.4
1,614,527	-				-1.4
1,614,527	-				-0.7
1,614,527	-				-1.1
1,614,527	-				-1.1
1,614,527	-				+0.9
1,614,527	-				-0.8
1,614,527	-				-1.8
1,614,527	-				+0.5
1,614,527	-				-0.9
1,614,527	-				+0.2
1,614,527	-				+0.3
1,614,527	-				+0.3
1,614,527	-				+0.6
1,614,527	-				+0.4
1,614,527	-				-2.9
1,614,528	+				-0.5
1,614,528	+				-1.9
1,614,528	+				-0.9
1,614,528	+				-2.1
1,614,529	-				-2.1
1,614,559	+				+0.5
1,614,560	-				-2.4
1,614,560	-				-0.9
1,614,618	+				-0.1
1,614,618	+				+0.7
1,614,644	+				+1.4
1,614,709	+				-2.2
1,614,709	+				-0.6
1,614,709	+				+1.2
1,614,709	+				-0.4
1,614,710	-				-0.4
1,614,710	-				-0.3
1,614,710	-				-1.4
1,614,710	-				-1.1
1,614,745	+				-0.3
1,614,745	+				-0.8
1,614,745	+				-0.1
1,614,745	+				+0.2
1,614,746	-				-1.7
1,614,767	+				-1.9
1,614,767	+				+1.5
1,614,767	+				+0.2
1,614,783	+				+1.9
1,614,783	+				-1.4
1,614,783	+				+0.9
1,614,784	-				-3.2
1,614,784	-				-0.2
1,614,784	-				-1.2
1,614,784	-				+0.1
1,614,785	+				-1.5
1,614,785	+				-0.6
1,614,785	+				+0.4
1,614,785	+				+1.6
1,614,785	+				-0.5
1,614,786	-				+0.5
1,614,786	-				+0.8
1,614,786	-				-0.9
1,614,786	-				+0.6
1,614,786	-				-1.1
1,614,786	-				-0.2
1,614,786	-				+0.3
1,614,789	+				-0.6
1,614,789	+				-0.1
1,614,790	-				+0.9
1,614,790	-				-2.1
1,614,790	-				+0.2
1,614,790	-				-1.5
1,614,790	-				-0.1
1,614,790	-				-0.1
1,614,864	+				-1.3
1,614,864	+				+0.9
1,614,864	+				+1.2
1,614,864	+				+0.2
1,614,893	+				-3.4
1,614,893	+				-0.1
1,614,893	+				+2.6
1,614,893	+				-1.4
1,614,893	+				+0.5
1,614,893	+				-2.8
1,614,894	-				-1.3
1,614,894	-				-1.1
1,614,894	-				-0.6
1,614,894	-				-0.3
1,614,894	-				+1.6
1,614,894	-				+1.5
1,614,894	-				+0.1
1,615,018	+		Psyr_1426	0.10	-2.4
1,615,018	+		Psyr_1426	0.10	+1.0
1,615,018	+		Psyr_1426	0.10	-1.2
1,615,018	+		Psyr_1426	0.10	-1.7
1,615,019	-		Psyr_1426	0.10	-0.6
1,615,019	-		Psyr_1426	0.10	-2.1
1,615,019	-		Psyr_1426	0.10	+0.8
1,615,019	-		Psyr_1426	0.10	-0.2
1,615,049	+		Psyr_1426	0.12	-1.5
1,615,049	+		Psyr_1426	0.12	-2.0
1,615,049	+		Psyr_1426	0.12	-0.2
1,615,049	+		Psyr_1426	0.12	+1.1
1,615,049	+		Psyr_1426	0.12	+1.3
1,615,050	-		Psyr_1426	0.12	+0.8
1,615,050	-		Psyr_1426	0.12	+1.4
1,615,050	-		Psyr_1426	0.12	-0.2
1,615,128	+		Psyr_1426	0.17	-0.6
1,615,128	+		Psyr_1426	0.17	-2.2
1,615,129	-		Psyr_1426	0.17	+0.7
1,615,150	+		Psyr_1426	0.19	-0.2
1,615,150	+		Psyr_1426	0.19	+0.5
1,615,150	+		Psyr_1426	0.19	-1.1
1,615,150	+		Psyr_1426	0.19	-0.8
1,615,151	-		Psyr_1426	0.19	+0.8
1,615,151	-		Psyr_1426	0.19	-0.0
1,615,151	-		Psyr_1426	0.19	+0.7
1,615,154	+		Psyr_1426	0.19	+0.2