Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0726 and Psyr_0727 overlap by 4 nucleotides Psyr_0727 and Psyr_0728 are separated by 171 nucleotides Psyr_0728 and Psyr_RNA9 are separated by 294 nucleotides Psyr_RNA9 and Psyr_RNA10 are separated by 29 nucleotides Psyr_RNA10 and Psyr_RNA11 are separated by 5 nucleotides Psyr_RNA11 and Psyr_RNA12 are separated by 95 nucleotides
Psyr_0726: Psyr_0726 - ribosomal large subunit pseudouridine synthase D, at 830,467 to 831,429
_0726
Psyr_0727: Psyr_0727 - Protein of unknown function DUF152, at 831,426 to 832,154
_0727
Psyr_0728: Psyr_0728 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 832,326 to 834,890
_0728
Psyr_RNA9: Psyr_RNA9 - tRNA-Asn, at 835,185 to 835,260
_RNA9
Psyr_RNA10: Psyr_RNA10 - tRNA-Pro, at 835,290 to 835,366
_RNA10
Psyr_RNA11: Psyr_RNA11 - tRNA-Lys, at 835,372 to 835,447
_RNA11
Psyr_RNA12: Psyr_RNA12 - tRNA-Pro, at 835,543 to 835,619
_RNA12
Position (kb) 832
833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 831.442 kb on + strand at 831.442 kb on + strand at 831.442 kb on + strand at 831.442 kb on + strand at 831.442 kb on + strand at 831.638 kb on - strand, within Psyr_0727 at 831.638 kb on - strand, within Psyr_0727 at 831.646 kb on + strand, within Psyr_0727 at 831.646 kb on + strand, within Psyr_0727 at 831.646 kb on + strand, within Psyr_0727 at 831.647 kb on - strand, within Psyr_0727 at 831.647 kb on - strand, within Psyr_0727 at 831.718 kb on + strand, within Psyr_0727 at 831.719 kb on - strand, within Psyr_0727 at 831.719 kb on - strand, within Psyr_0727 at 831.719 kb on - strand, within Psyr_0727 at 831.719 kb on - strand, within Psyr_0727 at 832.002 kb on + strand, within Psyr_0727 at 832.002 kb on + strand, within Psyr_0727 at 832.002 kb on + strand, within Psyr_0727 at 832.002 kb on + strand, within Psyr_0727 at 832.002 kb on + strand, within Psyr_0727 at 832.003 kb on - strand, within Psyr_0727 at 832.003 kb on - strand, within Psyr_0727 at 832.003 kb on - strand, within Psyr_0727 at 832.003 kb on - strand, within Psyr_0727 at 832.003 kb on - strand, within Psyr_0727 at 832.037 kb on + strand, within Psyr_0727 at 832.038 kb on - strand, within Psyr_0727 at 832.038 kb on - strand, within Psyr_0727 at 832.038 kb on - strand, within Psyr_0727 at 832.038 kb on - strand, within Psyr_0727 at 832.182 kb on + strand at 832.182 kb on + strand at 832.183 kb on - strand at 832.212 kb on - strand at 832.212 kb on - strand at 832.254 kb on + strand at 832.254 kb on + strand at 832.254 kb on + strand at 832.254 kb on + strand at 832.254 kb on + strand at 832.255 kb on - strand at 832.255 kb on - strand at 832.255 kb on - strand at 832.282 kb on + strand at 832.282 kb on + strand at 832.282 kb on + strand at 832.282 kb on + strand at 832.282 kb on + strand at 832.283 kb on - strand at 832.283 kb on - strand at 832.283 kb on - strand at 832.283 kb on - strand at 832.283 kb on - strand at 832.283 kb on - strand at 832.283 kb on - strand at 832.310 kb on + strand at 832.350 kb on - strand at 832.354 kb on + strand at 832.354 kb on + strand at 832.354 kb on + strand at 832.355 kb on - strand at 832.355 kb on - strand at 832.360 kb on + strand at 832.361 kb on - strand at 832.361 kb on - strand at 832.483 kb on + strand at 832.483 kb on + strand at 832.483 kb on + strand at 832.483 kb on + strand at 832.484 kb on - strand at 832.484 kb on - strand at 832.815 kb on + strand, within Psyr_0728 at 832.815 kb on + strand, within Psyr_0728 at 832.815 kb on + strand, within Psyr_0728 at 832.815 kb on + strand, within Psyr_0728 at 832.815 kb on + strand, within Psyr_0728 at 832.815 kb on + strand, within Psyr_0728 at 832.815 kb on + strand, within Psyr_0728 at 832.815 kb on + strand, within Psyr_0728 at 832.816 kb on - strand, within Psyr_0728 at 832.816 kb on - strand, within Psyr_0728 at 832.816 kb on - strand, within Psyr_0728 at 832.816 kb on - strand, within Psyr_0728 at 833.076 kb on + strand, within Psyr_0728 at 833.077 kb on - strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.289 kb on + strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.290 kb on - strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.291 kb on + strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.292 kb on - strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.293 kb on + strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.294 kb on - strand, within Psyr_0728 at 833.463 kb on + strand, within Psyr_0728 at 833.463 kb on + strand, within Psyr_0728 at 833.463 kb on + strand, within Psyr_0728 at 833.463 kb on + strand, within Psyr_0728 at 833.463 kb on + strand, within Psyr_0728 at 833.464 kb on - strand, within Psyr_0728 at 833.464 kb on - strand, within Psyr_0728 at 833.464 kb on - strand, within Psyr_0728 at 833.464 kb on - strand, within Psyr_0728 at 833.464 kb on - strand, within Psyr_0728 at 833.464 kb on - strand, within Psyr_0728 at 833.465 kb on + strand, within Psyr_0728 at 833.466 kb on - strand, within Psyr_0728 at 833.525 kb on + strand, within Psyr_0728 at 833.535 kb on + strand, within Psyr_0728 at 833.596 kb on + strand, within Psyr_0728 at 833.596 kb on + strand, within Psyr_0728 at 834.282 kb on + strand, within Psyr_0728 at 834.282 kb on + strand, within Psyr_0728 at 834.283 kb on - strand, within Psyr_0728 at 834.336 kb on + strand, within Psyr_0728 at 834.337 kb on - strand, within Psyr_0728 at 834.440 kb on + strand, within Psyr_0728 at 834.440 kb on + strand, within Psyr_0728 at 834.638 kb on + strand at 834.754 kb on - strand at 834.910 kb on - strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.911 kb on + strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.959 kb on + strand at 834.959 kb on + strand at 834.959 kb on + strand at 834.959 kb on + strand at 834.959 kb on + strand at 835.021 kb on + strand at 835.085 kb on + strand at 835.085 kb on + strand at 835.128 kb on + strand at 835.160 kb on + strand at 835.367 kb on + strand at 835.367 kb on + strand at 835.367 kb on + strand at 835.367 kb on + strand at 835.367 kb on + strand at 835.421 kb on + strand, within Psyr_RNA11 at 835.736 kb on + strand at 835.736 kb on + strand at 835.859 kb on + strand at 835.872 kb on + strand at 835.872 kb on + strand at 835.872 kb on + strand at 835.876 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 831,442 + -0.6 831,442 + +1.9 831,442 + -0.2 831,442 + -1.2 831,442 + +0.1 831,638 - Psyr_0727 0.29 -0.9 831,638 - Psyr_0727 0.29 -1.0 831,646 + Psyr_0727 0.30 -0.2 831,646 + Psyr_0727 0.30 +1.5 831,646 + Psyr_0727 0.30 +0.6 831,647 - Psyr_0727 0.30 -2.7 831,647 - Psyr_0727 0.30 +0.5 831,718 + Psyr_0727 0.40 -1.9 831,719 - Psyr_0727 0.40 -2.6 831,719 - Psyr_0727 0.40 -1.4 831,719 - Psyr_0727 0.40 +0.6 831,719 - Psyr_0727 0.40 -0.9 832,002 + Psyr_0727 0.79 +0.6 832,002 + Psyr_0727 0.79 -0.9 832,002 + Psyr_0727 0.79 +1.6 832,002 + Psyr_0727 0.79 -1.9 832,002 + Psyr_0727 0.79 +1.3 832,003 - Psyr_0727 0.79 +1.0 832,003 - Psyr_0727 0.79 -0.4 832,003 - Psyr_0727 0.79 +0.6 832,003 - Psyr_0727 0.79 -0.1 832,003 - Psyr_0727 0.79 -0.9 832,037 + Psyr_0727 0.84 -0.6 832,038 - Psyr_0727 0.84 -3.4 832,038 - Psyr_0727 0.84 -1.1 832,038 - Psyr_0727 0.84 -2.3 832,038 - Psyr_0727 0.84 +0.1 832,182 + +0.3 832,182 + -1.0 832,183 - +0.5 832,212 - -0.4 832,212 - +1.5 832,254 + -0.5 832,254 + +0.5 832,254 + -1.9 832,254 + +0.1 832,254 + +0.6 832,255 - +1.5 832,255 - -0.4 832,255 - -3.0 832,282 + +0.9 832,282 + -0.2 832,282 + -0.8 832,282 + -1.7 832,282 + +0.9 832,283 - +0.9 832,283 - +1.0 832,283 - +1.0 832,283 - +1.6 832,283 - -0.3 832,283 - -2.6 832,283 - +0.6 832,310 + -0.1 832,350 - -1.0 832,354 + +0.3 832,354 + +0.3 832,354 + -0.8 832,355 - +0.1 832,355 - +0.8 832,360 + -3.0 832,361 - +0.6 832,361 - +1.1 832,483 + +0.5 832,483 + +0.1 832,483 + +1.1 832,483 + -0.2 832,484 - -2.7 832,484 - +1.1 832,815 + Psyr_0728 0.19 -0.1 832,815 + Psyr_0728 0.19 -0.4 832,815 + Psyr_0728 0.19 -0.6 832,815 + Psyr_0728 0.19 -2.3 832,815 + Psyr_0728 0.19 +0.4 832,815 + Psyr_0728 0.19 -0.5 832,815 + Psyr_0728 0.19 -0.2 832,815 + Psyr_0728 0.19 -1.2 832,816 - Psyr_0728 0.19 +0.9 832,816 - Psyr_0728 0.19 -0.1 832,816 - Psyr_0728 0.19 -1.2 832,816 - Psyr_0728 0.19 +2.0 833,076 + Psyr_0728 0.29 -1.6 833,077 - Psyr_0728 0.29 +0.6 833,289 + Psyr_0728 0.38 +1.3 833,289 + Psyr_0728 0.38 -1.2 833,289 + Psyr_0728 0.38 +0.0 833,289 + Psyr_0728 0.38 +0.5 833,289 + Psyr_0728 0.38 -1.2 833,289 + Psyr_0728 0.38 +1.2 833,289 + Psyr_0728 0.38 +0.3 833,289 + Psyr_0728 0.38 -0.9 833,289 + Psyr_0728 0.38 +0.1 833,289 + Psyr_0728 0.38 +0.6 833,289 + Psyr_0728 0.38 -1.5 833,289 + Psyr_0728 0.38 -0.2 833,289 + Psyr_0728 0.38 +0.6 833,289 + Psyr_0728 0.38 -0.1 833,289 + Psyr_0728 0.38 +1.0 833,290 - Psyr_0728 0.38 -1.2 833,290 - Psyr_0728 0.38 -1.3 833,290 - Psyr_0728 0.38 +1.0 833,290 - Psyr_0728 0.38 -0.0 833,290 - Psyr_0728 0.38 -1.7 833,290 - Psyr_0728 0.38 +1.4 833,290 - Psyr_0728 0.38 -2.0 833,290 - Psyr_0728 0.38 -1.4 833,290 - Psyr_0728 0.38 -0.1 833,290 - Psyr_0728 0.38 -0.2 833,290 - Psyr_0728 0.38 -0.6 833,290 - Psyr_0728 0.38 +0.5 833,291 + Psyr_0728 0.38 -0.6 833,291 + Psyr_0728 0.38 -0.7 833,291 + Psyr_0728 0.38 +0.4 833,291 + Psyr_0728 0.38 -0.2 833,291 + Psyr_0728 0.38 -1.4 833,291 + Psyr_0728 0.38 +1.2 833,291 + Psyr_0728 0.38 -0.4 833,291 + Psyr_0728 0.38 +1.0 833,291 + Psyr_0728 0.38 -0.2 833,291 + Psyr_0728 0.38 -0.4 833,291 + Psyr_0728 0.38 +0.2 833,291 + Psyr_0728 0.38 -0.7 833,292 - Psyr_0728 0.38 -0.0 833,292 - Psyr_0728 0.38 -0.2 833,292 - Psyr_0728 0.38 -1.6 833,292 - Psyr_0728 0.38 +0.5 833,292 - Psyr_0728 0.38 -1.1 833,292 - Psyr_0728 0.38 -0.1 833,292 - Psyr_0728 0.38 -1.1 833,292 - Psyr_0728 0.38 -0.0 833,292 - Psyr_0728 0.38 -0.2 833,292 - Psyr_0728 0.38 -2.4 833,292 - Psyr_0728 0.38 -0.3 833,292 - Psyr_0728 0.38 -2.3 833,292 - Psyr_0728 0.38 -0.4 833,292 - Psyr_0728 0.38 +0.8 833,292 - Psyr_0728 0.38 -0.1 833,292 - Psyr_0728 0.38 -0.2 833,292 - Psyr_0728 0.38 -0.9 833,292 - Psyr_0728 0.38 -0.0 833,292 - Psyr_0728 0.38 +0.7 833,292 - Psyr_0728 0.38 -1.8 833,293 + Psyr_0728 0.38 -2.4 833,293 + Psyr_0728 0.38 -0.4 833,293 + Psyr_0728 0.38 -0.5 833,293 + Psyr_0728 0.38 +1.1 833,293 + Psyr_0728 0.38 -1.6 833,293 + Psyr_0728 0.38 -0.1 833,293 + Psyr_0728 0.38 -1.4 833,293 + Psyr_0728 0.38 +1.1 833,294 - Psyr_0728 0.38 -0.2 833,294 - Psyr_0728 0.38 +2.0 833,294 - Psyr_0728 0.38 -3.0 833,294 - Psyr_0728 0.38 +1.2 833,294 - Psyr_0728 0.38 +0.6 833,294 - Psyr_0728 0.38 -0.6 833,294 - Psyr_0728 0.38 -0.9 833,294 - Psyr_0728 0.38 -0.2 833,294 - Psyr_0728 0.38 +0.8 833,294 - Psyr_0728 0.38 -0.4 833,463 + Psyr_0728 0.44 +0.3 833,463 + Psyr_0728 0.44 +0.1 833,463 + Psyr_0728 0.44 +0.9 833,463 + Psyr_0728 0.44 -0.7 833,463 + Psyr_0728 0.44 +0.8 833,464 - Psyr_0728 0.44 -1.7 833,464 - Psyr_0728 0.44 -1.2 833,464 - Psyr_0728 0.44 -0.2 833,464 - Psyr_0728 0.44 -1.2 833,464 - Psyr_0728 0.44 -0.4 833,464 - Psyr_0728 0.44 +0.1 833,465 + Psyr_0728 0.44 -0.9 833,466 - Psyr_0728 0.44 +0.1 833,525 + Psyr_0728 0.47 -0.6 833,535 + Psyr_0728 0.47 +0.6 833,596 + Psyr_0728 0.50 +0.1 833,596 + Psyr_0728 0.50 -0.4 834,282 + Psyr_0728 0.76 +0.7 834,282 + Psyr_0728 0.76 +1.4 834,283 - Psyr_0728 0.76 +0.7 834,336 + Psyr_0728 0.78 +0.6 834,337 - Psyr_0728 0.78 -1.2 834,440 + Psyr_0728 0.82 -0.9 834,440 + Psyr_0728 0.82 -0.5 834,638 + -1.2 834,754 - +1.6 834,910 - -2.0 834,911 + +0.8 834,911 + -0.2 834,911 + +1.0 834,911 + -0.2 834,911 + -0.4 834,911 + +0.2 834,911 + +0.2 834,911 + -0.2 834,911 + +1.9 834,911 + +1.1 834,911 + +1.8 834,912 - -0.9 834,912 - +0.0 834,912 - +3.4 834,912 - -0.6 834,912 - -1.2 834,912 - +2.6 834,912 - +1.1 834,959 + +2.0 834,959 + +0.2 834,959 + -0.4 834,959 + +0.9 834,959 + -0.5 835,021 + -0.3 835,085 + -0.2 835,085 + -0.5 835,128 + +0.5 835,160 + +2.0 835,367 + +0.5 835,367 + -1.5 835,367 + -3.5 835,367 + -1.9 835,367 + +0.4 835,421 + Psyr_RNA11 0.64 -0.5 835,736 + -0.4 835,736 + -0.3 835,859 + -1.5 835,872 + -0.5 835,872 + -1.9 835,872 + +1.1 835,876 + +1.2
Or see this region's nucleotide sequence