Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0094

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
102,948	+		Psyr_0093	0.42	+0.6
102,948	+		Psyr_0093	0.42	+1.8
102,949	-		Psyr_0093	0.42	-1.2
102,949	-		Psyr_0093	0.42	+0.5
102,950	+		Psyr_0093	0.42	+2.3
102,950	+		Psyr_0093	0.42	+0.4
102,950	+		Psyr_0093	0.42	+0.7
102,950	+		Psyr_0093	0.42	-0.8
102,950	+		Psyr_0093	0.42	+1.7
102,950	+		Psyr_0093	0.42	-3.8
102,950	+		Psyr_0093	0.42	+0.4
102,951	-		Psyr_0093	0.42	-2.6
102,951	-		Psyr_0093	0.42	-1.3
102,951	-		Psyr_0093	0.42	-0.2
102,951	-		Psyr_0093	0.42	+0.2
102,951	-		Psyr_0093	0.42	-0.8
102,951	-		Psyr_0093	0.42	+0.9
102,951	-		Psyr_0093	0.42	-0.1
103,182	-		Psyr_0093	0.59	-0.2
103,182	-		Psyr_0093	0.59	+0.2
103,208	+		Psyr_0093	0.61	-0.6
103,208	+		Psyr_0093	0.61	-1.8
103,208	+		Psyr_0093	0.61	+0.3
103,209	-		Psyr_0093	0.61	+1.0
103,209	-		Psyr_0093	0.61	-0.4
103,209	-		Psyr_0093	0.61	+0.1
103,209	-		Psyr_0093	0.61	-1.3
103,209	-		Psyr_0093	0.61	-1.6
103,209	-		Psyr_0093	0.61	-0.6
103,209	-		Psyr_0093	0.61	+0.3
103,209	-		Psyr_0093	0.61	-0.5
103,524	+		Psyr_0093	0.83	-0.8
103,524	+		Psyr_0093	0.83	+1.1
103,524	+		Psyr_0093	0.83	+1.0
103,524	+		Psyr_0093	0.83	-0.7
103,525	-		Psyr_0093	0.83	+0.8
103,525	-		Psyr_0093	0.83	-1.6
103,525	-		Psyr_0093	0.83	-0.9
103,569	+		Psyr_0093	0.86	-1.4
103,569	+		Psyr_0093	0.86	+0.1
103,570	-		Psyr_0093	0.86	-0.5
103,570	-		Psyr_0093	0.86	-2.3
103,605	+		Psyr_0093	0.89	-0.4
103,605	+		Psyr_0093	0.89	+1.3
103,756	+				+1.1
103,756	+				-0.9
103,851	+				+0.8
103,851	+				-0.3
103,851	+				+1.9
103,852	-				-0.2
103,852	-				+0.2
103,852	-				+0.4
103,852	-				+2.4
103,852	-				+2.6
103,852	-				+0.1
103,867	+				+1.1
103,868	-				-0.5
103,868	-				-0.6
103,890	+				-0.7
103,890	+				+1.4
103,891	-				+0.7
103,940	+				-0.6
103,940	+				-1.1
103,955	+				-1.1
103,955	+				-0.4
103,955	+				-1.0
103,955	+				-1.9
103,955	+				-1.2
103,955	+				-2.0
103,955	+				-0.6
103,955	+				-0.5
103,955	+				+1.2
103,955	+				-0.3
103,955	+				+0.2
103,955	+				-1.1
103,955	+				-0.5
103,955	+				+0.2
103,956	-				-0.8
103,956	-				-0.1
103,956	-				+0.8
103,956	-				+0.2
103,956	-				+0.1
103,956	-				+1.0
103,956	-				+0.4
103,956	-				+0.3
103,956	-				+0.7
103,956	-				-1.3
103,956	-				-1.0
103,956	-				-1.1
103,956	-				-1.5
103,956	-				+1.1
103,956	-				+1.2
104,019	+		Psyr_0094	0.17	-2.3
104,019	+		Psyr_0094	0.17	+0.6
104,019	+		Psyr_0094	0.17	+0.7
104,020	-		Psyr_0094	0.18	-0.2
104,020	-		Psyr_0094	0.18	+0.5
104,020	-		Psyr_0094	0.18	-0.8
104,072	-		Psyr_0094	0.25	-1.0
104,072	-		Psyr_0094	0.25	+1.5
104,072	-		Psyr_0094	0.25	-2.2
104,075	+		Psyr_0094	0.25	+2.4
104,075	+		Psyr_0094	0.25	+0.1
104,075	+		Psyr_0094	0.25	-0.9
104,075	+		Psyr_0094	0.25	+1.4
104,076	-		Psyr_0094	0.26	-1.5
104,076	-		Psyr_0094	0.26	+0.4
104,076	-		Psyr_0094	0.26	-0.8
104,130	+		Psyr_0094	0.33	-1.0
104,130	+		Psyr_0094	0.33	+0.7
104,131	-		Psyr_0094	0.33	+1.0
104,280	+		Psyr_0094	0.54	-0.7
104,281	-		Psyr_0094	0.55	+1.0
104,281	-		Psyr_0094	0.55	-1.9
104,281	-		Psyr_0094	0.55	-1.5
104,378	+		Psyr_0094	0.68	-1.6
104,378	+		Psyr_0094	0.68	-0.2
104,378	+		Psyr_0094	0.68	-0.1
104,378	+		Psyr_0094	0.68	-1.1
104,379	-		Psyr_0094	0.69	-0.3
104,379	-		Psyr_0094	0.69	-2.0
104,379	-		Psyr_0094	0.69	-0.2
104,401	+		Psyr_0094	0.72	+1.1
104,431	+		Psyr_0094	0.76	-1.7
104,432	-		Psyr_0094	0.76	+0.7
104,439	+		Psyr_0094	0.77	-2.3
104,439	+		Psyr_0094	0.77	+0.9
104,440	-		Psyr_0094	0.77	+0.1
104,473	+		Psyr_0094	0.82	-2.0
104,473	+		Psyr_0094	0.82	+1.6
104,473	+		Psyr_0094	0.82	-0.4
104,474	-		Psyr_0094	0.82	-0.2
104,474	-		Psyr_0094	0.82	+0.9
104,474	-		Psyr_0094	0.82	-0.7
104,474	-		Psyr_0094	0.82	+0.0
104,474	-		Psyr_0094	0.82	-1.5
104,562	+				+0.3
104,573	+				-1.2
104,573	+				-0.4
104,573	+				-0.2
104,574	-				-0.6
104,574	-				+0.8
104,574	-				+0.1
104,574	-				+0.6
104,574	-				+0.7
104,665	-				-1.0
104,684	+				-1.6
104,684	+				+0.5
104,685	-				-0.2
104,716	+				+0.4
104,716	+				-0.1
104,716	+				+2.1
104,716	+				+1.5
104,716	+				-2.1
104,716	+				-0.9
104,716	+				-1.2
104,717	-				-1.5
104,717	-				+2.0
104,822	+				+1.6
104,988	-				-2.3
105,012	+				-0.1
105,012	+				+0.9
105,012	+				-0.7
105,012	+				-0.2
105,013	-				+0.4
105,013	-				-0.2
105,013	-				-3.6
105,013	-				+0.9
105,013	-				-0.3
105,013	-				+0.1
105,013	-				+0.2
105,213	+		Psyr_0095	0.18	-0.5
105,213	+		Psyr_0095	0.18	-0.1
105,214	-		Psyr_0095	0.19	-0.5
105,283	-		Psyr_0095	0.23	+0.1
105,363	+		Psyr_0095	0.29	+0.2
105,363	+		Psyr_0095	0.29	-2.3
105,363	+		Psyr_0095	0.29	-0.3
105,363	+		Psyr_0095	0.29	+0.6
105,363	+		Psyr_0095	0.29	-0.5
105,364	-		Psyr_0095	0.29	+0.6
105,367	+		Psyr_0095	0.29	+0.4
105,367	+		Psyr_0095	0.29	+0.8
105,429	+		Psyr_0095	0.34	-0.6
105,429	+		Psyr_0095	0.34	+0.4
105,429	+		Psyr_0095	0.34	-1.5
105,429	+		Psyr_0095	0.34	-1.5
105,429	+		Psyr_0095	0.34	-3.3
105,430	-		Psyr_0095	0.34	-0.9
105,430	-		Psyr_0095	0.34	-0.2
105,430	-		Psyr_0095	0.34	+0.4
105,430	-		Psyr_0095	0.34	+1.1
105,430	-		Psyr_0095	0.34	-2.8
105,430	-		Psyr_0095	0.34	+0.2
105,430	-		Psyr_0095	0.34	+0.5
105,430	-		Psyr_0095	0.34	-1.7
105,430	-		Psyr_0095	0.34	+1.0
105,430	-		Psyr_0095	0.34	+1.4
105,430	-		Psyr_0095	0.34	+0.3