Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4646

Experiment: sodium bromide 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4645 and Pf6N2E2_4646 are separated by 52 nucleotidesPf6N2E2_4646 and Pf6N2E2_4647 are separated by 81 nucleotides Pf6N2E2_4645 - Integral membrane protein, at 5,375,546 to 5,376,379 _4645 Pf6N2E2_4646 - probable membrane protein NMA1176, at 5,376,432 to 5,376,815 _4646 Pf6N2E2_4647 - Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-), at 5,376,897 to 5,378,084 _4647 Position (kb) 5376 5377Strain fitness (log2 ratio) -1 0 1at 5375.441 kb on + strandat 5375.442 kb on - strandat 5375.449 kb on + strandat 5375.450 kb on - strandat 5375.450 kb on - strandat 5375.450 kb on - strandat 5375.450 kb on - strandat 5375.450 kb on - strandat 5375.450 kb on - strandat 5375.455 kb on + strandat 5375.456 kb on - strandat 5375.456 kb on - strandat 5375.489 kb on + strandat 5375.489 kb on + strandat 5375.489 kb on + strandat 5375.489 kb on + strandat 5375.489 kb on + strandat 5375.490 kb on - strandat 5375.490 kb on - strandat 5375.490 kb on - strandat 5375.490 kb on - strandat 5375.490 kb on - strandat 5375.491 kb on + strandat 5375.491 kb on + strandat 5375.492 kb on - strandat 5375.599 kb on + strandat 5375.599 kb on + strandat 5375.600 kb on - strandat 5375.600 kb on - strandat 5376.011 kb on + strand, within Pf6N2E2_4645at 5376.011 kb on + strand, within Pf6N2E2_4645at 5376.011 kb on + strand, within Pf6N2E2_4645at 5376.011 kb on + strand, within Pf6N2E2_4645at 5376.011 kb on + strand, within Pf6N2E2_4645at 5376.012 kb on - strand, within Pf6N2E2_4645at 5376.118 kb on - strand, within Pf6N2E2_4645at 5376.192 kb on + strand, within Pf6N2E2_4645at 5376.192 kb on + strand, within Pf6N2E2_4645at 5376.200 kb on + strand, within Pf6N2E2_4645at 5376.299 kb on + strandat 5376.300 kb on - strandat 5376.300 kb on - strandat 5376.300 kb on - strandat 5376.404 kb on + strandat 5376.406 kb on + strandat 5376.407 kb on - strandat 5376.453 kb on - strandat 5376.453 kb on - strandat 5376.477 kb on + strand, within Pf6N2E2_4646at 5376.477 kb on + strand, within Pf6N2E2_4646at 5376.477 kb on + strand, within Pf6N2E2_4646at 5376.477 kb on + strand, within Pf6N2E2_4646at 5376.478 kb on - strand, within Pf6N2E2_4646at 5376.514 kb on - strand, within Pf6N2E2_4646at 5376.527 kb on + strand, within Pf6N2E2_4646at 5376.582 kb on + strand, within Pf6N2E2_4646at 5376.583 kb on - strand, within Pf6N2E2_4646at 5376.583 kb on - strand, within Pf6N2E2_4646at 5376.583 kb on - strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.717 kb on + strand, within Pf6N2E2_4646at 5376.718 kb on - strand, within Pf6N2E2_4646at 5376.718 kb on - strand, within Pf6N2E2_4646at 5376.718 kb on - strand, within Pf6N2E2_4646at 5376.718 kb on - strand, within Pf6N2E2_4646at 5376.718 kb on - strand, within Pf6N2E2_4646at 5376.718 kb on - strand, within Pf6N2E2_4646at 5376.729 kb on + strand, within Pf6N2E2_4646at 5376.730 kb on - strand, within Pf6N2E2_4646at 5376.917 kb on + strandat 5376.918 kb on - strandat 5376.918 kb on - strandat 5376.933 kb on + strandat 5376.933 kb on + strandat 5376.934 kb on - strandat 5376.934 kb on - strandat 5377.155 kb on + strand, within Pf6N2E2_4647at 5377.155 kb on + strand, within Pf6N2E2_4647at 5377.155 kb on + strand, within Pf6N2E2_4647at 5377.155 kb on + strand, within Pf6N2E2_4647at 5377.156 kb on - strand, within Pf6N2E2_4647at 5377.198 kb on - strand, within Pf6N2E2_4647at 5377.255 kb on + strand, within Pf6N2E2_4647at 5377.255 kb on + strand, within Pf6N2E2_4647at 5377.255 kb on + strand, within Pf6N2E2_4647at 5377.255 kb on + strand, within Pf6N2E2_4647at 5377.256 kb on - strand, within Pf6N2E2_4647at 5377.256 kb on - strand, within Pf6N2E2_4647at 5377.256 kb on - strand, within Pf6N2E2_4647at 5377.256 kb on - strand, within Pf6N2E2_4647at 5377.256 kb on - strand, within Pf6N2E2_4647at 5377.286 kb on + strand, within Pf6N2E2_4647at 5377.287 kb on - strand, within Pf6N2E2_4647at 5377.287 kb on - strand, within Pf6N2E2_4647at 5377.555 kb on + strand, within Pf6N2E2_4647at 5377.615 kb on + strand, within Pf6N2E2_4647at 5377.615 kb on + strand, within Pf6N2E2_4647at 5377.616 kb on - strand, within Pf6N2E2_4647at 5377.616 kb on - strand, within Pf6N2E2_4647at 5377.616 kb on - strand, within Pf6N2E2_4647at 5377.660 kb on + strand, within Pf6N2E2_4647at 5377.660 kb on + strand, within Pf6N2E2_4647at 5377.660 kb on + strand, within Pf6N2E2_4647at 5377.660 kb on + strand, within Pf6N2E2_4647at 5377.661 kb on - strand, within Pf6N2E2_4647at 5377.717 kb on + strand, within Pf6N2E2_4647at 5377.717 kb on + strand, within Pf6N2E2_4647at 5377.717 kb on + strand, within Pf6N2E2_4647at 5377.718 kb on - strand, within Pf6N2E2_4647at 5377.768 kb on + strand, within Pf6N2E2_4647at 5377.769 kb on - strand, within Pf6N2E2_4647at 5377.769 kb on - strand, within Pf6N2E2_4647at 5377.800 kb on + strand, within Pf6N2E2_4647at 5377.800 kb on + strand, within Pf6N2E2_4647at 5377.801 kb on - strand, within Pf6N2E2_4647at 5377.801 kb on - strand, within Pf6N2E2_4647at 5377.801 kb on - strand, within Pf6N2E2_4647at 5377.801 kb on - strand, within Pf6N2E2_4647

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M
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5,375,441 + -1.0
5,375,442 - -0.3
5,375,449 + -1.2
5,375,450 - -1.3
5,375,450 - -0.2
5,375,450 - +0.0
5,375,450 - -0.2
5,375,450 - -1.6
5,375,450 - -0.3
5,375,455 + -0.0
5,375,456 - -0.4
5,375,456 - +0.7
5,375,489 + +0.6
5,375,489 + +1.4
5,375,489 + +0.0
5,375,489 + +0.1
5,375,489 + +0.0
5,375,490 - +0.3
5,375,490 - +1.0
5,375,490 - +0.4
5,375,490 - +0.7
5,375,490 - -0.2
5,375,491 + -0.3
5,375,491 + -1.1
5,375,492 - +0.4
5,375,599 + -0.8
5,375,599 + -0.3
5,375,600 - +0.0
5,375,600 - +0.7
5,376,011 + Pf6N2E2_4645 0.56 +0.0
5,376,011 + Pf6N2E2_4645 0.56 -0.1
5,376,011 + Pf6N2E2_4645 0.56 -0.4
5,376,011 + Pf6N2E2_4645 0.56 -1.0
5,376,011 + Pf6N2E2_4645 0.56 -0.2
5,376,012 - Pf6N2E2_4645 0.56 +0.7
5,376,118 - Pf6N2E2_4645 0.69 +0.8
5,376,192 + Pf6N2E2_4645 0.77 +0.1
5,376,192 + Pf6N2E2_4645 0.77 -0.3
5,376,200 + Pf6N2E2_4645 0.78 +0.9
5,376,299 + +0.1
5,376,300 - +0.3
5,376,300 - -0.0
5,376,300 - -0.4
5,376,404 + -1.2
5,376,406 + -0.4
5,376,407 - +0.8
5,376,453 - +0.3
5,376,453 - +0.2
5,376,477 + Pf6N2E2_4646 0.12 -1.0
5,376,477 + Pf6N2E2_4646 0.12 -0.5
5,376,477 + Pf6N2E2_4646 0.12 +0.1
5,376,477 + Pf6N2E2_4646 0.12 -0.0
5,376,478 - Pf6N2E2_4646 0.12 +0.2
5,376,514 - Pf6N2E2_4646 0.21 +0.4
5,376,527 + Pf6N2E2_4646 0.25 +0.3
5,376,582 + Pf6N2E2_4646 0.39 -0.4
5,376,583 - Pf6N2E2_4646 0.39 -0.1
5,376,583 - Pf6N2E2_4646 0.39 +1.1
5,376,583 - Pf6N2E2_4646 0.39 -0.6
5,376,717 + Pf6N2E2_4646 0.74 -0.1
5,376,717 + Pf6N2E2_4646 0.74 -0.1
5,376,717 + Pf6N2E2_4646 0.74 -0.1
5,376,717 + Pf6N2E2_4646 0.74 -0.4
5,376,717 + Pf6N2E2_4646 0.74 +0.4
5,376,717 + Pf6N2E2_4646 0.74 -0.3
5,376,717 + Pf6N2E2_4646 0.74 +0.1
5,376,717 + Pf6N2E2_4646 0.74 +0.2
5,376,717 + Pf6N2E2_4646 0.74 -0.1
5,376,718 - Pf6N2E2_4646 0.74 -0.9
5,376,718 - Pf6N2E2_4646 0.74 -0.8
5,376,718 - Pf6N2E2_4646 0.74 -0.6
5,376,718 - Pf6N2E2_4646 0.74 -0.5
5,376,718 - Pf6N2E2_4646 0.74 -1.1
5,376,718 - Pf6N2E2_4646 0.74 -0.5
5,376,729 + Pf6N2E2_4646 0.77 -0.1
5,376,730 - Pf6N2E2_4646 0.78 +0.0
5,376,917 + +0.1
5,376,918 - +1.0
5,376,918 - -1.4
5,376,933 + +0.0
5,376,933 + -1.0
5,376,934 - -0.4
5,376,934 - -0.4
5,377,155 + Pf6N2E2_4647 0.22 +0.5
5,377,155 + Pf6N2E2_4647 0.22 -0.1
5,377,155 + Pf6N2E2_4647 0.22 -0.3
5,377,155 + Pf6N2E2_4647 0.22 +0.6
5,377,156 - Pf6N2E2_4647 0.22 -0.2
5,377,198 - Pf6N2E2_4647 0.25 +0.5
5,377,255 + Pf6N2E2_4647 0.30 -0.2
5,377,255 + Pf6N2E2_4647 0.30 -0.8
5,377,255 + Pf6N2E2_4647 0.30 +0.7
5,377,255 + Pf6N2E2_4647 0.30 +0.2
5,377,256 - Pf6N2E2_4647 0.30 +0.2
5,377,256 - Pf6N2E2_4647 0.30 +0.6
5,377,256 - Pf6N2E2_4647 0.30 +0.6
5,377,256 - Pf6N2E2_4647 0.30 -1.0
5,377,256 - Pf6N2E2_4647 0.30 -0.3
5,377,286 + Pf6N2E2_4647 0.33 -0.5
5,377,287 - Pf6N2E2_4647 0.33 -0.1
5,377,287 - Pf6N2E2_4647 0.33 +0.2
5,377,555 + Pf6N2E2_4647 0.55 -0.3
5,377,615 + Pf6N2E2_4647 0.60 -0.0
5,377,615 + Pf6N2E2_4647 0.60 -0.2
5,377,616 - Pf6N2E2_4647 0.61 -0.3
5,377,616 - Pf6N2E2_4647 0.61 -0.4
5,377,616 - Pf6N2E2_4647 0.61 -1.1
5,377,660 + Pf6N2E2_4647 0.64 -0.2
5,377,660 + Pf6N2E2_4647 0.64 +0.2
5,377,660 + Pf6N2E2_4647 0.64 +1.0
5,377,660 + Pf6N2E2_4647 0.64 +1.0
5,377,661 - Pf6N2E2_4647 0.64 +0.7
5,377,717 + Pf6N2E2_4647 0.69 +0.4
5,377,717 + Pf6N2E2_4647 0.69 +0.2
5,377,717 + Pf6N2E2_4647 0.69 +0.5
5,377,718 - Pf6N2E2_4647 0.69 +0.5
5,377,768 + Pf6N2E2_4647 0.73 -0.1
5,377,769 - Pf6N2E2_4647 0.73 -1.1
5,377,769 - Pf6N2E2_4647 0.73 -0.0
5,377,800 + Pf6N2E2_4647 0.76 +0.0
5,377,800 + Pf6N2E2_4647 0.76 +0.9
5,377,801 - Pf6N2E2_4647 0.76 -0.5
5,377,801 - Pf6N2E2_4647 0.76 +0.3
5,377,801 - Pf6N2E2_4647 0.76 -0.1
5,377,801 - Pf6N2E2_4647 0.76 -0.5

Or see this region's nucleotide sequence