Experiment: sodium bromide 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_418 and Pf6N2E2_419 are separated by 39 nucleotides Pf6N2E2_419 and Pf6N2E2_420 are separated by 15 nucleotides Pf6N2E2_420 and Pf6N2E2_421 are separated by 11 nucleotides Pf6N2E2_421 and Pf6N2E2_422 are separated by 551 nucleotides
Pf6N2E2_418 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 486,040 to 488,142
_418
Pf6N2E2_419 - STAS domain protein, at 488,182 to 488,466
_419
Pf6N2E2_420 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 488,482 to 488,850
_420
Pf6N2E2_421 - Methyl-accepting chemotaxis protein, at 488,862 to 490,013
_421
Pf6N2E2_422 - Na+ driven multidrug efflux pump, at 490,565 to 491,863
_422
Position (kb) 488
489
490
491 Strain fitness (log2 ratio) -2
-1
0
1 at 488.148 kb on + strand at 488.149 kb on - strand at 488.170 kb on - strand at 488.170 kb on - strand at 488.170 kb on - strand at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.400 kb on - strand, within Pf6N2E2_419 at 488.400 kb on - strand, within Pf6N2E2_419 at 488.454 kb on - strand at 488.631 kb on - strand, within Pf6N2E2_420 at 488.631 kb on - strand, within Pf6N2E2_420 at 488.836 kb on + strand at 488.837 kb on - strand at 488.864 kb on - strand at 488.864 kb on - strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.942 kb on - strand at 489.496 kb on + strand, within Pf6N2E2_421 at 489.496 kb on + strand, within Pf6N2E2_421 at 489.496 kb on + strand, within Pf6N2E2_421 at 489.496 kb on + strand, within Pf6N2E2_421 at 489.497 kb on - strand, within Pf6N2E2_421 at 489.497 kb on - strand, within Pf6N2E2_421 at 489.514 kb on - strand, within Pf6N2E2_421 at 489.514 kb on - strand, within Pf6N2E2_421 at 489.903 kb on + strand at 489.904 kb on - strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.117 kb on - strand at 490.117 kb on - strand at 490.178 kb on + strand at 490.179 kb on - strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.197 kb on + strand at 490.198 kb on - strand at 490.213 kb on - strand at 490.262 kb on + strand at 490.263 kb on - strand at 490.544 kb on + strand at 490.545 kb on - strand at 490.545 kb on - strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.904 kb on + strand, within Pf6N2E2_422 at 490.904 kb on + strand, within Pf6N2E2_422 at 490.905 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422
Per-strain Table
Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M remove 488,148 + -0.1 488,149 - -0.2 488,170 - +0.4 488,170 - -0.7 488,170 - -0.1 488,278 + Pf6N2E2_419 0.34 +0.2 488,278 + Pf6N2E2_419 0.34 +0.2 488,278 + Pf6N2E2_419 0.34 +0.9 488,278 + Pf6N2E2_419 0.34 +0.5 488,279 - Pf6N2E2_419 0.34 -0.2 488,279 - Pf6N2E2_419 0.34 +0.6 488,279 - Pf6N2E2_419 0.34 +0.6 488,279 - Pf6N2E2_419 0.34 +0.8 488,400 - Pf6N2E2_419 0.76 -0.2 488,400 - Pf6N2E2_419 0.76 +1.4 488,454 - -1.1 488,631 - Pf6N2E2_420 0.40 -0.6 488,631 - Pf6N2E2_420 0.40 -0.4 488,836 + +0.4 488,837 - +0.5 488,864 - -0.3 488,864 - +0.6 488,941 + -1.8 488,941 + +0.0 488,941 + -0.5 488,941 + -0.7 488,941 + -0.8 488,942 - -0.1 489,496 + Pf6N2E2_421 0.55 -0.1 489,496 + Pf6N2E2_421 0.55 +0.1 489,496 + Pf6N2E2_421 0.55 -0.4 489,496 + Pf6N2E2_421 0.55 -1.4 489,497 - Pf6N2E2_421 0.55 +0.2 489,497 - Pf6N2E2_421 0.55 -0.8 489,514 - Pf6N2E2_421 0.57 -0.9 489,514 - Pf6N2E2_421 0.57 -0.3 489,903 + +0.3 489,904 - -0.3 490,106 + -0.6 490,106 + -1.4 490,106 + -0.4 490,107 - -2.6 490,107 - +0.6 490,107 - -0.6 490,107 - -1.2 490,117 - -0.6 490,117 - +0.6 490,178 + +0.5 490,179 - +0.6 490,190 + -2.0 490,190 + +0.3 490,190 + +0.0 490,197 + +0.2 490,198 - -1.2 490,213 - -0.1 490,262 + +0.3 490,263 - -0.6 490,544 + +0.5 490,545 - +1.0 490,545 - -0.5 490,616 + -0.7 490,616 + -0.4 490,616 + +0.9 490,616 + +1.1 490,617 - +0.2 490,617 - -0.2 490,617 - +0.5 490,617 - +0.1 490,617 - -1.0 490,904 + Pf6N2E2_422 0.26 +0.8 490,904 + Pf6N2E2_422 0.26 +0.4 490,905 - Pf6N2E2_422 0.26 -0.1 490,945 - Pf6N2E2_422 0.29 +0.2 490,945 - Pf6N2E2_422 0.29 -0.3 490,945 - Pf6N2E2_422 0.29 -0.3
Or see this region's nucleotide sequence