Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06163 and H281DRAFT_06164 overlap by 11 nucleotides H281DRAFT_06164 and H281DRAFT_06165 are separated by 356 nucleotides H281DRAFT_06165 and H281DRAFT_06166 are separated by 12 nucleotides
H281DRAFT_06163: H281DRAFT_06163 - hypothetical protein, at 56,476 to 56,760
_06163
H281DRAFT_06164: H281DRAFT_06164 - protein of unknown function (DUF4400), at 56,750 to 57,355
_06164
H281DRAFT_06165: H281DRAFT_06165 - hypothetical protein, at 57,712 to 58,581
_06165
H281DRAFT_06166: H281DRAFT_06166 - Superfamily I DNA or RNA helicase, at 58,594 to 60,285
_06166
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.749 kb on + strand at 56.749 kb on + strand at 56.749 kb on + strand at 56.750 kb on - strand at 56.750 kb on - strand at 56.769 kb on + strand at 56.779 kb on - strand at 56.779 kb on - strand at 56.889 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 57.348 kb on - strand at 57.348 kb on - strand at 57.353 kb on + strand at 57.353 kb on + strand at 57.372 kb on + strand at 57.373 kb on - strand at 57.386 kb on + strand at 57.400 kb on - strand at 57.400 kb on - strand at 57.400 kb on - strand at 57.489 kb on + strand at 57.663 kb on + strand at 57.664 kb on - strand at 57.664 kb on - strand at 57.664 kb on - strand at 57.695 kb on + strand at 57.695 kb on + strand at 57.696 kb on - strand at 57.711 kb on + strand at 57.712 kb on - strand at 58.096 kb on - strand, within H281DRAFT_06165 at 58.376 kb on - strand, within H281DRAFT_06165 at 58.690 kb on - strand at 58.862 kb on + strand, within H281DRAFT_06166 at 58.875 kb on + strand, within H281DRAFT_06166 at 59.027 kb on - strand, within H281DRAFT_06166 at 59.027 kb on - strand, within H281DRAFT_06166 at 59.035 kb on + strand, within H281DRAFT_06166 at 59.182 kb on + strand, within H281DRAFT_06166 at 59.254 kb on + strand, within H281DRAFT_06166 at 59.254 kb on + strand, within H281DRAFT_06166 at 59.254 kb on + strand, within H281DRAFT_06166 at 59.342 kb on - strand, within H281DRAFT_06166
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 56,749 + +0.3 56,749 + +0.7 56,749 + +0.1 56,750 - +2.3 56,750 - +0.2 56,769 + -1.0 56,779 - +0.2 56,779 - +0.5 56,889 + H281DRAFT_06164 0.23 +0.1 56,892 + H281DRAFT_06164 0.23 +0.2 56,892 + H281DRAFT_06164 0.23 +0.5 56,892 + H281DRAFT_06164 0.23 -0.7 57,348 - -0.9 57,348 - -0.5 57,353 + +0.1 57,353 + +1.0 57,372 + +0.5 57,373 - -0.2 57,386 + +1.4 57,400 - +0.1 57,400 - -0.2 57,400 - +0.3 57,489 + +0.2 57,663 + -0.1 57,664 - -0.5 57,664 - -1.3 57,664 - +0.5 57,695 + -1.0 57,695 + +0.3 57,696 - -1.0 57,711 + -0.3 57,712 - +0.1 58,096 - H281DRAFT_06165 0.44 +0.4 58,376 - H281DRAFT_06165 0.76 -0.6 58,690 - +1.3 58,862 + H281DRAFT_06166 0.16 -0.0 58,875 + H281DRAFT_06166 0.17 +0.1 59,027 - H281DRAFT_06166 0.26 -1.3 59,027 - H281DRAFT_06166 0.26 +1.2 59,035 + H281DRAFT_06166 0.26 +2.0 59,182 + H281DRAFT_06166 0.35 +1.5 59,254 + H281DRAFT_06166 0.39 -0.2 59,254 + H281DRAFT_06166 0.39 +0.2 59,254 + H281DRAFT_06166 0.39 -1.8 59,342 - H281DRAFT_06166 0.44 +0.0
Or see this region's nucleotide sequence