Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06012 and H281DRAFT_06013 are separated by 112 nucleotides H281DRAFT_06013 and H281DRAFT_06014 are separated by 88 nucleotides
H281DRAFT_06012: H281DRAFT_06012 - hypothetical protein, at 14,403 to 15,620
_06012
H281DRAFT_06013: H281DRAFT_06013 - O-sialoglycoprotein endopeptidase, at 15,733 to 16,761
_06013
H281DRAFT_06014: H281DRAFT_06014 - GTP cyclohydrolase I, at 16,850 to 17,656
_06014
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.808 kb on + strand, within H281DRAFT_06012 at 14.809 kb on - strand, within H281DRAFT_06012 at 14.809 kb on - strand, within H281DRAFT_06012 at 14.872 kb on + strand, within H281DRAFT_06012 at 15.098 kb on - strand, within H281DRAFT_06012 at 15.098 kb on - strand, within H281DRAFT_06012 at 15.329 kb on + strand, within H281DRAFT_06012 at 15.329 kb on + strand, within H281DRAFT_06012 at 15.330 kb on - strand, within H281DRAFT_06012 at 15.330 kb on - strand, within H281DRAFT_06012 at 15.390 kb on - strand, within H281DRAFT_06012 at 15.390 kb on - strand, within H281DRAFT_06012 at 15.390 kb on - strand, within H281DRAFT_06012 at 15.390 kb on - strand at 15.390 kb on - strand, within H281DRAFT_06012 at 15.436 kb on + strand, within H281DRAFT_06012 at 15.436 kb on + strand, within H281DRAFT_06012 at 15.437 kb on - strand at 15.437 kb on - strand, within H281DRAFT_06012 at 15.437 kb on - strand, within H281DRAFT_06012 at 15.454 kb on + strand, within H281DRAFT_06012 at 15.454 kb on + strand, within H281DRAFT_06012 at 15.455 kb on - strand, within H281DRAFT_06012 at 15.455 kb on - strand, within H281DRAFT_06012 at 15.605 kb on + strand at 15.606 kb on - strand at 15.633 kb on + strand at 15.633 kb on + strand at 15.634 kb on - strand at 15.675 kb on + strand at 16.885 kb on - strand at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.933 kb on - strand, within H281DRAFT_06014 at 16.933 kb on - strand, within H281DRAFT_06014 at 16.933 kb on - strand, within H281DRAFT_06014 at 17.010 kb on + strand, within H281DRAFT_06014 at 17.248 kb on + strand, within H281DRAFT_06014 at 17.278 kb on - strand, within H281DRAFT_06014 at 17.278 kb on - strand, within H281DRAFT_06014 at 17.328 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.711 kb on + strand at 17.712 kb on - strand at 17.743 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 14,808 + H281DRAFT_06012 0.33 +0.2 14,809 - H281DRAFT_06012 0.33 +0.4 14,809 - H281DRAFT_06012 0.33 +0.2 14,872 + H281DRAFT_06012 0.39 +0.2 15,098 - H281DRAFT_06012 0.57 -0.4 15,098 - H281DRAFT_06012 0.57 +0.6 15,329 + H281DRAFT_06012 0.76 +0.2 15,329 + H281DRAFT_06012 0.76 +0.8 15,330 - H281DRAFT_06012 0.76 +1.1 15,330 - H281DRAFT_06012 0.76 +1.2 15,390 - H281DRAFT_06012 0.81 +0.7 15,390 - H281DRAFT_06012 0.81 +0.3 15,390 - H281DRAFT_06012 0.81 -2.4 15,390 - -0.5 15,390 - H281DRAFT_06012 0.81 +0.5 15,436 + H281DRAFT_06012 0.85 +0.8 15,436 + H281DRAFT_06012 0.85 +1.8 15,437 - +0.6 15,437 - H281DRAFT_06012 0.85 -1.0 15,437 - H281DRAFT_06012 0.85 +1.1 15,454 + H281DRAFT_06012 0.86 -1.1 15,454 + H281DRAFT_06012 0.86 -0.1 15,455 - H281DRAFT_06012 0.86 +0.5 15,455 - H281DRAFT_06012 0.86 -2.2 15,605 + +0.4 15,606 - -1.6 15,633 + -0.2 15,633 + -0.0 15,634 - +1.3 15,675 + -0.3 16,885 - +0.4 16,932 + H281DRAFT_06014 0.10 -3.4 16,932 + H281DRAFT_06014 0.10 -0.5 16,932 + H281DRAFT_06014 0.10 +0.1 16,932 + H281DRAFT_06014 0.10 +0.2 16,932 + H281DRAFT_06014 0.10 -1.4 16,933 - H281DRAFT_06014 0.10 +0.1 16,933 - H281DRAFT_06014 0.10 -0.3 16,933 - H281DRAFT_06014 0.10 -1.4 17,010 + H281DRAFT_06014 0.20 -2.0 17,248 + H281DRAFT_06014 0.49 -0.4 17,278 - H281DRAFT_06014 0.53 -2.3 17,278 - H281DRAFT_06014 0.53 -0.5 17,328 + H281DRAFT_06014 0.59 +0.7 17,458 + H281DRAFT_06014 0.75 +0.5 17,458 + H281DRAFT_06014 0.75 -1.5 17,458 + H281DRAFT_06014 0.75 -0.8 17,458 + H281DRAFT_06014 0.75 -0.2 17,458 + H281DRAFT_06014 0.75 -1.0 17,458 + H281DRAFT_06014 0.75 +0.5 17,459 - H281DRAFT_06014 0.75 -0.0 17,459 - H281DRAFT_06014 0.75 +0.2 17,459 - H281DRAFT_06014 0.75 -2.3 17,459 - H281DRAFT_06014 0.75 -0.1 17,459 - H281DRAFT_06014 0.75 -1.4 17,459 - H281DRAFT_06014 0.75 +0.4 17,711 + +0.8 17,712 - -0.5 17,743 + +0.6
Or see this region's nucleotide sequence