Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05330 and H281DRAFT_05331 are separated by 247 nucleotides H281DRAFT_05331 and H281DRAFT_05332 overlap by 26 nucleotides H281DRAFT_05332 and H281DRAFT_05333 overlap by 4 nucleotides H281DRAFT_05333 and H281DRAFT_05334 are separated by 70 nucleotides
H281DRAFT_05330: H281DRAFT_05330 - urea transporter, at 80,730 to 81,593
_05330
H281DRAFT_05331: H281DRAFT_05331 - hypothetical protein, at 81,841 to 82,395
_05331
H281DRAFT_05332: H281DRAFT_05332 - Pimeloyl-ACP methyl ester carboxylesterase, at 82,370 to 83,314
_05332
H281DRAFT_05333: H281DRAFT_05333 - hypothetical protein, at 83,311 to 84,192
_05333
H281DRAFT_05334: H281DRAFT_05334 - Short-chain dehydrogenase, at 84,263 to 85,171
_05334
Position (kb) 82
83
84 Strain fitness (log2 ratio) -1
0
1 at 81.793 kb on - strand at 81.827 kb on + strand at 81.851 kb on + strand at 81.975 kb on + strand, within H281DRAFT_05331 at 82.150 kb on - strand, within H281DRAFT_05331 at 82.152 kb on + strand, within H281DRAFT_05331 at 82.202 kb on + strand, within H281DRAFT_05331 at 82.451 kb on + strand at 82.521 kb on + strand, within H281DRAFT_05332 at 82.943 kb on - strand, within H281DRAFT_05332 at 83.146 kb on - strand, within H281DRAFT_05332 at 83.516 kb on + strand, within H281DRAFT_05333 at 83.641 kb on - strand, within H281DRAFT_05333 at 83.651 kb on + strand, within H281DRAFT_05333 at 83.680 kb on - strand, within H281DRAFT_05333 at 83.817 kb on - strand, within H281DRAFT_05333 at 83.948 kb on + strand, within H281DRAFT_05333 at 83.967 kb on + strand, within H281DRAFT_05333 at 84.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 81,793 - +0.0 81,827 + -0.5 81,851 + +0.5 81,975 + H281DRAFT_05331 0.24 -1.4 82,150 - H281DRAFT_05331 0.56 +0.7 82,152 + H281DRAFT_05331 0.56 +1.3 82,202 + H281DRAFT_05331 0.65 +0.4 82,451 + +0.5 82,521 + H281DRAFT_05332 0.16 +0.4 82,943 - H281DRAFT_05332 0.61 -0.6 83,146 - H281DRAFT_05332 0.82 +1.4 83,516 + H281DRAFT_05333 0.23 -0.6 83,641 - H281DRAFT_05333 0.37 +0.3 83,651 + H281DRAFT_05333 0.39 +0.1 83,680 - H281DRAFT_05333 0.42 +1.1 83,817 - H281DRAFT_05333 0.57 +0.3 83,948 + H281DRAFT_05333 0.72 +0.3 83,967 + H281DRAFT_05333 0.74 +0.5 84,169 + +0.1
Or see this region's nucleotide sequence