Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05235

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05234 and H281DRAFT_05235 are separated by 164 nucleotidesH281DRAFT_05235 and H281DRAFT_05236 are separated by 269 nucleotides H281DRAFT_05234: H281DRAFT_05234 - Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation, at 200,155 to 201,870 _05234 H281DRAFT_05235: H281DRAFT_05235 - hypothetical protein, at 202,035 to 203,072 _05235 H281DRAFT_05236: H281DRAFT_05236 - MFS transporter, MHS family, alpha-ketoglutarate permease, at 203,342 to 204,646 _05236 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.149 kb on - strand, within H281DRAFT_05234at 201.203 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.313 kb on + strand, within H281DRAFT_05234at 201.313 kb on + strand, within H281DRAFT_05234at 201.314 kb on - strand, within H281DRAFT_05234at 201.316 kb on + strand, within H281DRAFT_05234at 201.317 kb on - strand, within H281DRAFT_05234at 201.324 kb on + strand, within H281DRAFT_05234at 201.363 kb on + strand, within H281DRAFT_05234at 201.549 kb on + strand, within H281DRAFT_05234at 201.601 kb on + strand, within H281DRAFT_05234at 201.602 kb on - strand, within H281DRAFT_05234at 201.602 kb on - strand, within H281DRAFT_05234at 201.602 kb on - strand, within H281DRAFT_05234at 201.617 kb on + strand, within H281DRAFT_05234at 201.628 kb on + strand, within H281DRAFT_05234at 201.628 kb on + strand, within H281DRAFT_05234at 201.675 kb on + strand, within H281DRAFT_05234at 201.675 kb on + strand, within H281DRAFT_05234at 201.676 kb on - strand, within H281DRAFT_05234at 201.676 kb on - strand, within H281DRAFT_05234at 201.676 kb on - strand, within H281DRAFT_05234at 201.832 kb on + strandat 201.844 kb on + strandat 202.037 kb on - strandat 202.275 kb on + strand, within H281DRAFT_05235at 202.275 kb on + strand, within H281DRAFT_05235at 202.275 kb on + strand, within H281DRAFT_05235at 202.276 kb on - strand, within H281DRAFT_05235at 202.277 kb on + strand, within H281DRAFT_05235at 202.277 kb on + strand, within H281DRAFT_05235at 202.277 kb on + strand, within H281DRAFT_05235at 202.278 kb on - strand, within H281DRAFT_05235at 202.278 kb on - strand, within H281DRAFT_05235at 202.375 kb on + strand, within H281DRAFT_05235at 202.384 kb on + strand, within H281DRAFT_05235at 202.385 kb on - strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.459 kb on - strand, within H281DRAFT_05235at 202.544 kb on + strand, within H281DRAFT_05235at 202.544 kb on + strandat 202.551 kb on - strand, within H281DRAFT_05235at 202.640 kb on - strandat 202.798 kb on - strand, within H281DRAFT_05235at 202.842 kb on + strand, within H281DRAFT_05235at 202.924 kb on + strand, within H281DRAFT_05235at 202.936 kb on + strand, within H281DRAFT_05235at 202.937 kb on - strand, within H281DRAFT_05235at 202.937 kb on - strand, within H281DRAFT_05235at 202.937 kb on - strand, within H281DRAFT_05235at 202.942 kb on + strand, within H281DRAFT_05235at 202.943 kb on - strand, within H281DRAFT_05235at 202.943 kb on - strand, within H281DRAFT_05235at 203.036 kb on - strandat 203.089 kb on + strandat 203.115 kb on - strandat 203.180 kb on + strandat 203.450 kb on + strandat 203.450 kb on + strandat 203.451 kb on - strandat 203.451 kb on - strandat 203.451 kb on - strandat 203.474 kb on + strand, within H281DRAFT_05236at 203.474 kb on + strand, within H281DRAFT_05236at 203.475 kb on - strand, within H281DRAFT_05236at 203.510 kb on - strand, within H281DRAFT_05236at 203.777 kb on + strand, within H281DRAFT_05236at 203.777 kb on + strand, within H281DRAFT_05236at 203.777 kb on + strand, within H281DRAFT_05236at 203.778 kb on - strand, within H281DRAFT_05236at 203.778 kb on - strand, within H281DRAFT_05236at 203.779 kb on + strand, within H281DRAFT_05236at 203.831 kb on + strand, within H281DRAFT_05236at 203.953 kb on - strand, within H281DRAFT_05236at 203.973 kb on - strand, within H281DRAFT_05236

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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201,149 - H281DRAFT_05234 0.58 -0.4
201,203 - H281DRAFT_05234 0.61 -0.9
201,224 - H281DRAFT_05234 0.62 +0.6
201,224 - H281DRAFT_05234 0.62 -0.8
201,224 - H281DRAFT_05234 0.62 -0.1
201,224 - H281DRAFT_05234 0.62 -0.2
201,313 + H281DRAFT_05234 0.67 +0.7
201,313 + H281DRAFT_05234 0.67 -0.6
201,314 - H281DRAFT_05234 0.68 +1.5
201,316 + H281DRAFT_05234 0.68 +0.1
201,317 - H281DRAFT_05234 0.68 +0.2
201,324 + H281DRAFT_05234 0.68 -0.2
201,363 + H281DRAFT_05234 0.70 -0.2
201,549 + H281DRAFT_05234 0.81 -0.5
201,601 + H281DRAFT_05234 0.84 +0.2
201,602 - H281DRAFT_05234 0.84 -2.2
201,602 - H281DRAFT_05234 0.84 -0.5
201,602 - H281DRAFT_05234 0.84 +0.2
201,617 + H281DRAFT_05234 0.85 -0.9
201,628 + H281DRAFT_05234 0.86 +0.2
201,628 + H281DRAFT_05234 0.86 -1.5
201,675 + H281DRAFT_05234 0.89 +0.5
201,675 + H281DRAFT_05234 0.89 +1.3
201,676 - H281DRAFT_05234 0.89 -0.3
201,676 - H281DRAFT_05234 0.89 +0.6
201,676 - H281DRAFT_05234 0.89 -0.5
201,832 + -0.2
201,844 + -0.4
202,037 - +0.4
202,275 + H281DRAFT_05235 0.23 -0.8
202,275 + H281DRAFT_05235 0.23 -3.6
202,275 + H281DRAFT_05235 0.23 +0.0
202,276 - H281DRAFT_05235 0.23 +0.0
202,277 + H281DRAFT_05235 0.23 +0.1
202,277 + H281DRAFT_05235 0.23 -0.1
202,277 + H281DRAFT_05235 0.23 -0.1
202,278 - H281DRAFT_05235 0.23 +0.6
202,278 - H281DRAFT_05235 0.23 +0.1
202,375 + H281DRAFT_05235 0.33 +0.1
202,384 + H281DRAFT_05235 0.34 +0.5
202,385 - H281DRAFT_05235 0.34 -0.5
202,458 + H281DRAFT_05235 0.41 +2.7
202,458 + H281DRAFT_05235 0.41 +0.1
202,458 + H281DRAFT_05235 0.41 -0.2
202,459 - H281DRAFT_05235 0.41 -0.3
202,544 + H281DRAFT_05235 0.49 +1.9
202,544 + +1.5
202,551 - H281DRAFT_05235 0.50 -0.4
202,640 - -2.3
202,798 - H281DRAFT_05235 0.74 -0.3
202,842 + H281DRAFT_05235 0.78 -1.5
202,924 + H281DRAFT_05235 0.86 +0.2
202,936 + H281DRAFT_05235 0.87 -0.0
202,937 - H281DRAFT_05235 0.87 -1.8
202,937 - H281DRAFT_05235 0.87 -2.2
202,937 - H281DRAFT_05235 0.87 +0.1
202,942 + H281DRAFT_05235 0.87 +1.0
202,943 - H281DRAFT_05235 0.87 +1.0
202,943 - H281DRAFT_05235 0.87 -0.0
203,036 - -0.2
203,089 + +0.5
203,115 - -0.5
203,180 + +0.4
203,450 + +1.3
203,450 + +0.1
203,451 - +2.1
203,451 - +0.1
203,451 - +0.5
203,474 + H281DRAFT_05236 0.10 +0.2
203,474 + H281DRAFT_05236 0.10 -1.0
203,475 - H281DRAFT_05236 0.10 -1.0
203,510 - H281DRAFT_05236 0.13 +0.0
203,777 + H281DRAFT_05236 0.33 -0.1
203,777 + H281DRAFT_05236 0.33 +0.4
203,777 + H281DRAFT_05236 0.33 -0.2
203,778 - H281DRAFT_05236 0.33 +0.4
203,778 - H281DRAFT_05236 0.33 -0.4
203,779 + H281DRAFT_05236 0.33 +0.2
203,831 + H281DRAFT_05236 0.37 +1.1
203,953 - H281DRAFT_05236 0.47 -1.2
203,973 - H281DRAFT_05236 0.48 -0.4

Or see this region's nucleotide sequence