Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04981 and H281DRAFT_04982 are separated by 273 nucleotides H281DRAFT_04982 and H281DRAFT_04983 are separated by 123 nucleotides H281DRAFT_04983 and H281DRAFT_04984 are separated by 14 nucleotides H281DRAFT_04984 and H281DRAFT_04985 are separated by 46 nucleotides
H281DRAFT_04981: H281DRAFT_04981 - Protein of unknown function (DUF3563), at 165,818 to 165,964
_04981
H281DRAFT_04982: H281DRAFT_04982 - transcriptional regulator, MerR family, at 166,238 to 166,690
_04982
H281DRAFT_04983: H281DRAFT_04983 - copper chaperone, at 166,814 to 167,032
_04983
H281DRAFT_04984: H281DRAFT_04984 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 167,047 to 167,967
_04984
H281DRAFT_04985: H281DRAFT_04985 - error-prone DNA polymerase, DnaE-like, at 168,014 to 171,163
_04985
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 165.819 kb on + strand at 165.894 kb on + strand, within H281DRAFT_04981 at 165.894 kb on + strand, within H281DRAFT_04981 at 165.895 kb on - strand, within H281DRAFT_04981 at 165.895 kb on - strand, within H281DRAFT_04981 at 165.954 kb on + strand at 165.954 kb on + strand at 165.954 kb on + strand at 166.043 kb on + strand at 166.043 kb on + strand at 166.044 kb on - strand at 166.115 kb on + strand at 166.115 kb on + strand at 166.116 kb on - strand at 166.116 kb on - strand at 166.123 kb on + strand at 166.123 kb on + strand at 166.123 kb on + strand at 166.123 kb on + strand at 166.123 kb on + strand at 166.169 kb on + strand at 166.170 kb on - strand at 166.170 kb on - strand at 166.174 kb on - strand at 166.174 kb on - strand at 166.180 kb on + strand at 166.181 kb on - strand at 166.202 kb on + strand at 166.202 kb on + strand at 166.324 kb on + strand, within H281DRAFT_04982 at 166.390 kb on + strand, within H281DRAFT_04982 at 166.575 kb on + strand, within H281DRAFT_04982 at 166.752 kb on + strand at 166.753 kb on - strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.879 kb on + strand, within H281DRAFT_04983 at 166.914 kb on + strand, within H281DRAFT_04983 at 166.915 kb on - strand, within H281DRAFT_04983 at 166.915 kb on - strand, within H281DRAFT_04983 at 166.994 kb on + strand, within H281DRAFT_04983 at 167.067 kb on - strand at 167.755 kb on + strand, within H281DRAFT_04984 at 167.755 kb on + strand, within H281DRAFT_04984 at 167.847 kb on + strand, within H281DRAFT_04984 at 167.955 kb on + strand at 167.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 165,819 + +0.6 165,894 + H281DRAFT_04981 0.52 +0.9 165,894 + H281DRAFT_04981 0.52 +1.1 165,895 - H281DRAFT_04981 0.52 +0.4 165,895 - H281DRAFT_04981 0.52 -0.4 165,954 + +1.3 165,954 + -0.4 165,954 + +0.4 166,043 + -1.6 166,043 + -3.4 166,044 - -0.3 166,115 + -1.4 166,115 + +0.3 166,116 - -1.0 166,116 - +0.0 166,123 + +0.7 166,123 + +1.2 166,123 + +0.6 166,123 + -1.8 166,123 + -2.2 166,169 + -0.8 166,170 - -0.2 166,170 - +0.9 166,174 - -0.1 166,174 - +0.5 166,180 + +1.0 166,181 - -0.3 166,202 + -1.4 166,202 + -1.6 166,324 + H281DRAFT_04982 0.19 -0.5 166,390 + H281DRAFT_04982 0.34 -0.5 166,575 + H281DRAFT_04982 0.74 -0.2 166,752 + -0.1 166,753 - -0.3 166,772 + +0.2 166,772 + -0.9 166,772 + -0.5 166,879 + H281DRAFT_04983 0.30 -0.7 166,914 + H281DRAFT_04983 0.46 -2.0 166,915 - H281DRAFT_04983 0.46 -0.8 166,915 - H281DRAFT_04983 0.46 +0.0 166,994 + H281DRAFT_04983 0.82 +0.4 167,067 - -3.6 167,755 + H281DRAFT_04984 0.77 +0.4 167,755 + H281DRAFT_04984 0.77 +0.2 167,847 + H281DRAFT_04984 0.87 +0.5 167,955 + -0.8 167,956 - -0.1
Or see this region's nucleotide sequence