Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04739 and H281DRAFT_04740 are separated by 322 nucleotides H281DRAFT_04740 and H281DRAFT_04741 are separated by 31 nucleotides
H281DRAFT_04739: H281DRAFT_04739 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 146,880 to 147,713
_04739
H281DRAFT_04740: H281DRAFT_04740 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 148,036 to 149,400
_04740
H281DRAFT_04741: H281DRAFT_04741 - homogentisate 1,2-dioxygenase, at 149,432 to 150,778
_04741
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 147.152 kb on - strand, within H281DRAFT_04739 at 147.161 kb on - strand, within H281DRAFT_04739 at 147.191 kb on + strand, within H281DRAFT_04739 at 147.226 kb on - strand, within H281DRAFT_04739 at 147.287 kb on - strand, within H281DRAFT_04739 at 147.315 kb on + strand, within H281DRAFT_04739 at 147.322 kb on - strand, within H281DRAFT_04739 at 147.327 kb on + strand, within H281DRAFT_04739 at 147.441 kb on - strand, within H281DRAFT_04739 at 147.715 kb on + strand at 147.728 kb on - strand at 147.733 kb on - strand at 147.733 kb on - strand at 147.790 kb on + strand at 147.791 kb on - strand at 147.791 kb on - strand at 147.791 kb on - strand at 147.893 kb on + strand at 147.932 kb on + strand at 148.016 kb on + strand at 148.016 kb on + strand at 148.016 kb on + strand at 148.065 kb on + strand at 148.186 kb on + strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.460 kb on + strand, within H281DRAFT_04740 at 148.673 kb on + strand, within H281DRAFT_04740 at 148.673 kb on + strand, within H281DRAFT_04740 at 148.674 kb on - strand, within H281DRAFT_04740 at 148.870 kb on + strand, within H281DRAFT_04740 at 149.100 kb on - strand, within H281DRAFT_04740 at 149.437 kb on + strand at 149.580 kb on - strand, within H281DRAFT_04741 at 149.655 kb on - strand at 149.681 kb on - strand, within H281DRAFT_04741 at 149.907 kb on - strand, within H281DRAFT_04741 at 149.907 kb on - strand, within H281DRAFT_04741 at 150.167 kb on + strand, within H281DRAFT_04741 at 150.275 kb on + strand, within H281DRAFT_04741 at 150.276 kb on - strand, within H281DRAFT_04741 at 150.285 kb on - strand, within H281DRAFT_04741 at 150.287 kb on - strand, within H281DRAFT_04741 at 150.290 kb on + strand, within H281DRAFT_04741 at 150.291 kb on - strand, within H281DRAFT_04741 at 150.325 kb on + strand, within H281DRAFT_04741
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 147,152 - H281DRAFT_04739 0.33 -1.0 147,161 - H281DRAFT_04739 0.34 -1.3 147,191 + H281DRAFT_04739 0.37 -1.4 147,226 - H281DRAFT_04739 0.41 +1.0 147,287 - H281DRAFT_04739 0.49 -0.4 147,315 + H281DRAFT_04739 0.52 -0.1 147,322 - H281DRAFT_04739 0.53 +1.3 147,327 + H281DRAFT_04739 0.54 +1.1 147,441 - H281DRAFT_04739 0.67 +0.5 147,715 + +0.8 147,728 - +0.1 147,733 - +0.3 147,733 - -1.1 147,790 + -1.2 147,791 - -0.3 147,791 - -1.4 147,791 - +0.1 147,893 + -0.9 147,932 + -0.0 148,016 + -0.5 148,016 + -0.4 148,016 + -1.9 148,065 + +0.7 148,186 + H281DRAFT_04740 0.11 +0.4 148,187 - H281DRAFT_04740 0.11 -0.1 148,187 - H281DRAFT_04740 0.11 -0.2 148,187 - H281DRAFT_04740 0.11 +0.0 148,460 + H281DRAFT_04740 0.31 -1.3 148,673 + H281DRAFT_04740 0.47 -0.1 148,673 + H281DRAFT_04740 0.47 +0.6 148,674 - H281DRAFT_04740 0.47 -0.1 148,870 + H281DRAFT_04740 0.61 -0.2 149,100 - H281DRAFT_04740 0.78 -0.1 149,437 + +0.3 149,580 - H281DRAFT_04741 0.11 -0.9 149,655 - -1.7 149,681 - H281DRAFT_04741 0.18 -1.0 149,907 - H281DRAFT_04741 0.35 +0.3 149,907 - H281DRAFT_04741 0.35 +0.8 150,167 + H281DRAFT_04741 0.55 -0.2 150,275 + H281DRAFT_04741 0.63 -0.2 150,276 - H281DRAFT_04741 0.63 +0.9 150,285 - H281DRAFT_04741 0.63 +0.4 150,287 - H281DRAFT_04741 0.63 +0.5 150,290 + H281DRAFT_04741 0.64 +3.2 150,291 - H281DRAFT_04741 0.64 +0.6 150,325 + H281DRAFT_04741 0.66 -1.0
Or see this region's nucleotide sequence