Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04606 and H281DRAFT_04607 are separated by 106 nucleotides H281DRAFT_04607 and H281DRAFT_04608 are separated by 37 nucleotides H281DRAFT_04608 and H281DRAFT_04609 are separated by 38 nucleotides H281DRAFT_04609 and H281DRAFT_04610 are separated by 494 nucleotides
H281DRAFT_04606: H281DRAFT_04606 - threonine ammonia-lyase, biosynthetic, long form, at 3 to 782
_04606
H281DRAFT_04607: H281DRAFT_04607 - hypothetical protein, at 889 to 1,260
_04607
H281DRAFT_04608: H281DRAFT_04608 - hypothetical protein, at 1,298 to 1,474
_04608
H281DRAFT_04609: H281DRAFT_04609 - hypothetical protein, at 1,513 to 1,731
_04609
H281DRAFT_04610: H281DRAFT_04610 - Fe-S oxidoreductase, at 2,226 to 6,320
_04610
Position (kb)
1
2 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 0.736 kb on + strand at 0.766 kb on + strand at 0.766 kb on + strand at 0.898 kb on - strand at 1.025 kb on + strand, within H281DRAFT_04607 at 1.026 kb on - strand, within H281DRAFT_04607 at 1.164 kb on + strand, within H281DRAFT_04607 at 1.699 kb on - strand, within H281DRAFT_04609 at 1.844 kb on + strand at 2.078 kb on + strand at 2.078 kb on + strand at 2.079 kb on - strand at 2.311 kb on - strand at 2.316 kb on + strand at 2.316 kb on + strand at 2.317 kb on - strand at 2.317 kb on - strand at 2.356 kb on + strand at 2.431 kb on - strand at 2.431 kb on - strand at 2.473 kb on - strand at 2.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 736 + -0.5 766 + -0.4 766 + -0.6 898 - -0.8 1,025 + H281DRAFT_04607 0.37 +0.3 1,026 - H281DRAFT_04607 0.37 +1.2 1,164 + H281DRAFT_04607 0.74 -0.7 1,699 - H281DRAFT_04609 0.85 +0.0 1,844 + -0.3 2,078 + +0.9 2,078 + -1.4 2,079 - -1.3 2,311 - -1.8 2,316 + -3.9 2,316 + -4.0 2,317 - -2.2 2,317 - -4.6 2,356 + -3.0 2,431 - -1.4 2,431 - -3.2 2,473 - -2.8 2,473 - -1.6
Or see this region's nucleotide sequence