Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04343 and H281DRAFT_04344 are separated by 93 nucleotides H281DRAFT_04344 and H281DRAFT_04345 overlap by 4 nucleotides H281DRAFT_04345 and H281DRAFT_04346 are separated by 386 nucleotides
H281DRAFT_04343: H281DRAFT_04343 - protease-4, at 61,703 to 62,707
_04343
H281DRAFT_04344: H281DRAFT_04344 - 16S rRNA (cytidine1402-2'-O)-methyltransferase, at 62,801 to 63,520
_04344
H281DRAFT_04345: H281DRAFT_04345 - septum formation protein, at 63,517 to 64,134
_04345
H281DRAFT_04346: H281DRAFT_04346 - uncharacterized protein, at 64,521 to 65,165
_04346
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.523 kb on + strand, within H281DRAFT_04343 at 62.524 kb on - strand, within H281DRAFT_04343 at 62.524 kb on - strand, within H281DRAFT_04343 at 62.524 kb on - strand, within H281DRAFT_04343 at 62.814 kb on - strand at 62.836 kb on + strand at 62.836 kb on + strand at 63.084 kb on + strand, within H281DRAFT_04344 at 63.084 kb on + strand, within H281DRAFT_04344 at 63.084 kb on + strand, within H281DRAFT_04344 at 63.084 kb on + strand, within H281DRAFT_04344 at 63.085 kb on - strand, within H281DRAFT_04344 at 63.085 kb on - strand, within H281DRAFT_04344 at 63.362 kb on + strand, within H281DRAFT_04344 at 63.362 kb on + strand, within H281DRAFT_04344 at 63.362 kb on + strand, within H281DRAFT_04344 at 63.363 kb on - strand, within H281DRAFT_04344 at 63.408 kb on + strand, within H281DRAFT_04344 at 63.409 kb on - strand, within H281DRAFT_04344 at 63.409 kb on - strand, within H281DRAFT_04344 at 63.409 kb on - strand, within H281DRAFT_04344 at 63.409 kb on - strand, within H281DRAFT_04344 at 63.491 kb on - strand at 63.491 kb on - strand at 63.504 kb on + strand at 63.504 kb on + strand at 63.504 kb on + strand at 63.505 kb on - strand at 63.532 kb on + strand at 63.671 kb on + strand, within H281DRAFT_04345 at 63.671 kb on + strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.796 kb on - strand, within H281DRAFT_04345 at 63.796 kb on - strand, within H281DRAFT_04345 at 64.066 kb on + strand, within H281DRAFT_04345 at 64.067 kb on - strand, within H281DRAFT_04345 at 64.067 kb on - strand, within H281DRAFT_04345 at 64.067 kb on - strand, within H281DRAFT_04345 at 64.150 kb on - strand at 64.164 kb on + strand at 64.165 kb on - strand at 64.165 kb on - strand at 64.199 kb on + strand at 64.199 kb on + strand at 64.306 kb on + strand at 64.416 kb on + strand at 64.416 kb on + strand at 64.473 kb on + strand at 64.645 kb on + strand, within H281DRAFT_04346 at 64.645 kb on + strand, within H281DRAFT_04346 at 64.755 kb on + strand, within H281DRAFT_04346
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 62,523 + H281DRAFT_04343 0.82 -0.1 62,524 - H281DRAFT_04343 0.82 +0.6 62,524 - H281DRAFT_04343 0.82 +0.2 62,524 - H281DRAFT_04343 0.82 +0.9 62,814 - +0.8 62,836 + -0.5 62,836 + +0.8 63,084 + H281DRAFT_04344 0.39 -0.3 63,084 + H281DRAFT_04344 0.39 -3.0 63,084 + H281DRAFT_04344 0.39 +0.1 63,084 + H281DRAFT_04344 0.39 -0.3 63,085 - H281DRAFT_04344 0.39 +0.2 63,085 - H281DRAFT_04344 0.39 -0.0 63,362 + H281DRAFT_04344 0.78 +0.3 63,362 + H281DRAFT_04344 0.78 -0.2 63,362 + H281DRAFT_04344 0.78 +0.1 63,363 - H281DRAFT_04344 0.78 -0.0 63,408 + H281DRAFT_04344 0.84 +1.1 63,409 - H281DRAFT_04344 0.84 -0.2 63,409 - H281DRAFT_04344 0.84 +0.5 63,409 - H281DRAFT_04344 0.84 -0.1 63,409 - H281DRAFT_04344 0.84 -0.8 63,491 - +0.5 63,491 - -0.3 63,504 + +1.4 63,504 + -0.6 63,504 + +1.1 63,505 - +0.1 63,532 + -2.0 63,671 + H281DRAFT_04345 0.25 -0.6 63,671 + H281DRAFT_04345 0.25 -0.4 63,693 - H281DRAFT_04345 0.28 +0.7 63,693 - H281DRAFT_04345 0.28 +1.1 63,693 - H281DRAFT_04345 0.28 -1.7 63,693 - H281DRAFT_04345 0.28 +0.6 63,693 - H281DRAFT_04345 0.28 -0.0 63,796 - H281DRAFT_04345 0.45 +1.0 63,796 - H281DRAFT_04345 0.45 +0.2 64,066 + H281DRAFT_04345 0.89 +0.1 64,067 - H281DRAFT_04345 0.89 +0.2 64,067 - H281DRAFT_04345 0.89 +0.3 64,067 - H281DRAFT_04345 0.89 -0.9 64,150 - +0.0 64,164 + -0.2 64,165 - -0.7 64,165 - +0.3 64,199 + +0.9 64,199 + -0.3 64,306 + +0.1 64,416 + +0.4 64,416 + +0.1 64,473 + -0.7 64,645 + H281DRAFT_04346 0.19 -0.9 64,645 + H281DRAFT_04346 0.19 -0.1 64,755 + H281DRAFT_04346 0.36 -2.5
Or see this region's nucleotide sequence