Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04043 and H281DRAFT_04044 are separated by 56 nucleotides H281DRAFT_04044 and H281DRAFT_04045 overlap by 1 nucleotides H281DRAFT_04045 and H281DRAFT_04046 overlap by 4 nucleotides H281DRAFT_04046 and H281DRAFT_04047 are separated by 7 nucleotides
H281DRAFT_04043: H281DRAFT_04043 - Pimeloyl-ACP methyl ester carboxylesterase, at 142,780 to 143,745
_04043
H281DRAFT_04044: H281DRAFT_04044 - D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55, at 143,802 to 144,635
_04044
H281DRAFT_04045: H281DRAFT_04045 - L-aminopeptidase DmpA. Serine peptidase. MEROPS family S58, at 144,635 to 145,747
_04045
H281DRAFT_04046: H281DRAFT_04046 - glutathione transport system permease protein, at 145,744 to 146,649
_04046
H281DRAFT_04047: H281DRAFT_04047 - glutathione transport system permease protein, at 146,657 to 147,577
_04047
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 143.709 kb on - strand at 143.746 kb on + strand at 143.746 kb on + strand at 143.746 kb on + strand at 143.747 kb on - strand at 144.203 kb on - strand, within H281DRAFT_04044 at 144.290 kb on + strand, within H281DRAFT_04044 at 144.290 kb on + strand, within H281DRAFT_04044 at 144.290 kb on + strand, within H281DRAFT_04044 at 144.358 kb on + strand, within H281DRAFT_04044 at 144.689 kb on + strand at 144.852 kb on + strand, within H281DRAFT_04045 at 144.852 kb on + strand, within H281DRAFT_04045 at 145.155 kb on + strand, within H281DRAFT_04045 at 145.156 kb on - strand, within H281DRAFT_04045 at 145.278 kb on + strand, within H281DRAFT_04045 at 145.279 kb on - strand, within H281DRAFT_04045 at 145.332 kb on + strand, within H281DRAFT_04045 at 145.450 kb on + strand, within H281DRAFT_04045 at 145.450 kb on + strand, within H281DRAFT_04045 at 145.607 kb on + strand, within H281DRAFT_04045 at 145.849 kb on - strand, within H281DRAFT_04046 at 145.986 kb on - strand, within H281DRAFT_04046 at 145.986 kb on - strand, within H281DRAFT_04046 at 146.019 kb on + strand, within H281DRAFT_04046 at 146.075 kb on + strand, within H281DRAFT_04046 at 146.075 kb on + strand, within H281DRAFT_04046 at 146.075 kb on + strand, within H281DRAFT_04046 at 146.075 kb on + strand, within H281DRAFT_04046 at 146.076 kb on - strand, within H281DRAFT_04046 at 146.076 kb on - strand, within H281DRAFT_04046 at 146.076 kb on - strand, within H281DRAFT_04046 at 146.101 kb on - strand, within H281DRAFT_04046 at 146.273 kb on + strand, within H281DRAFT_04046 at 146.273 kb on + strand, within H281DRAFT_04046 at 146.276 kb on + strand, within H281DRAFT_04046 at 146.277 kb on - strand, within H281DRAFT_04046 at 146.383 kb on - strand, within H281DRAFT_04046 at 146.448 kb on - strand, within H281DRAFT_04046 at 146.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 143,709 - +1.1 143,746 + -2.1 143,746 + -0.7 143,746 + -0.4 143,747 - +0.0 144,203 - H281DRAFT_04044 0.48 +0.2 144,290 + H281DRAFT_04044 0.59 +0.2 144,290 + H281DRAFT_04044 0.59 +0.7 144,290 + H281DRAFT_04044 0.59 -0.9 144,358 + H281DRAFT_04044 0.67 -0.7 144,689 + +2.2 144,852 + H281DRAFT_04045 0.19 +1.2 144,852 + H281DRAFT_04045 0.19 +0.4 145,155 + H281DRAFT_04045 0.47 +0.1 145,156 - H281DRAFT_04045 0.47 +1.2 145,278 + H281DRAFT_04045 0.58 -1.1 145,279 - H281DRAFT_04045 0.58 -0.3 145,332 + H281DRAFT_04045 0.63 +0.3 145,450 + H281DRAFT_04045 0.73 +0.1 145,450 + H281DRAFT_04045 0.73 +0.2 145,607 + H281DRAFT_04045 0.87 +0.5 145,849 - H281DRAFT_04046 0.12 +1.2 145,986 - H281DRAFT_04046 0.27 +0.5 145,986 - H281DRAFT_04046 0.27 +0.6 146,019 + H281DRAFT_04046 0.30 -0.4 146,075 + H281DRAFT_04046 0.37 +0.6 146,075 + H281DRAFT_04046 0.37 +0.1 146,075 + H281DRAFT_04046 0.37 -0.7 146,075 + H281DRAFT_04046 0.37 +0.5 146,076 - H281DRAFT_04046 0.37 +1.5 146,076 - H281DRAFT_04046 0.37 +0.7 146,076 - H281DRAFT_04046 0.37 +0.5 146,101 - H281DRAFT_04046 0.39 +0.0 146,273 + H281DRAFT_04046 0.58 -2.9 146,273 + H281DRAFT_04046 0.58 +0.7 146,276 + H281DRAFT_04046 0.59 +1.0 146,277 - H281DRAFT_04046 0.59 +1.2 146,383 - H281DRAFT_04046 0.71 -0.2 146,448 - H281DRAFT_04046 0.78 -1.4 146,692 - -0.2
Or see this region's nucleotide sequence