Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03571 and H281DRAFT_03572 overlap by 4 nucleotides H281DRAFT_03572 and H281DRAFT_03573 are separated by 118 nucleotides
H281DRAFT_03571: H281DRAFT_03571 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 78,737 to 79,702
_03571
H281DRAFT_03572: H281DRAFT_03572 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 79,699 to 80,892
_03572
H281DRAFT_03573: H281DRAFT_03573 - DNA-binding transcriptional regulator, LysR family, at 81,011 to 81,949
_03573
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.738 kb on + strand at 78.738 kb on + strand at 78.753 kb on + strand at 79.042 kb on + strand, within H281DRAFT_03571 at 79.042 kb on + strand, within H281DRAFT_03571 at 79.043 kb on - strand, within H281DRAFT_03571 at 79.160 kb on + strand, within H281DRAFT_03571 at 79.177 kb on - strand, within H281DRAFT_03571 at 79.180 kb on + strand, within H281DRAFT_03571 at 79.265 kb on + strand, within H281DRAFT_03571 at 79.444 kb on - strand, within H281DRAFT_03571 at 79.776 kb on + strand at 80.071 kb on + strand, within H281DRAFT_03572 at 80.072 kb on - strand, within H281DRAFT_03572 at 80.159 kb on + strand, within H281DRAFT_03572 at 80.714 kb on + strand, within H281DRAFT_03572 at 80.906 kb on - strand at 81.207 kb on - strand, within H281DRAFT_03573 at 81.307 kb on + strand, within H281DRAFT_03573 at 81.307 kb on + strand, within H281DRAFT_03573 at 81.489 kb on - strand, within H281DRAFT_03573 at 81.648 kb on + strand, within H281DRAFT_03573 at 81.885 kb on + strand at 81.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 78,738 + -1.0 78,738 + -1.5 78,753 + +0.4 79,042 + H281DRAFT_03571 0.32 -2.4 79,042 + H281DRAFT_03571 0.32 +0.1 79,043 - H281DRAFT_03571 0.32 +0.5 79,160 + H281DRAFT_03571 0.44 -1.2 79,177 - H281DRAFT_03571 0.46 +0.3 79,180 + H281DRAFT_03571 0.46 -1.6 79,265 + H281DRAFT_03571 0.55 +0.1 79,444 - H281DRAFT_03571 0.73 -1.0 79,776 + +0.4 80,071 + H281DRAFT_03572 0.31 +1.3 80,072 - H281DRAFT_03572 0.31 +0.3 80,159 + H281DRAFT_03572 0.39 +1.0 80,714 + H281DRAFT_03572 0.85 -2.1 80,906 - +0.2 81,207 - H281DRAFT_03573 0.21 +0.2 81,307 + H281DRAFT_03573 0.32 +2.7 81,307 + H281DRAFT_03573 0.32 -3.5 81,489 - H281DRAFT_03573 0.51 +0.5 81,648 + H281DRAFT_03573 0.68 -0.7 81,885 + -1.3 81,886 - +0.1
Or see this region's nucleotide sequence