Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03548

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03547 and H281DRAFT_03548 are separated by 324 nucleotidesH281DRAFT_03548 and H281DRAFT_03549 are separated by 102 nucleotidesH281DRAFT_03549 and H281DRAFT_03550 are separated by 48 nucleotides H281DRAFT_03547: H281DRAFT_03547 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains, at 47,328 to 48,809 _03547 H281DRAFT_03548: H281DRAFT_03548 - H+/gluconate symporter, at 49,134 to 50,534 _03548 H281DRAFT_03549: H281DRAFT_03549 - reactive intermediate/imine deaminase, at 50,637 to 51,038 _03549 H281DRAFT_03550: H281DRAFT_03550 - two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC, at 51,087 to 54,605 _03550 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 48.343 kb on + strand, within H281DRAFT_03547at 48.343 kb on + strand, within H281DRAFT_03547at 48.344 kb on - strand, within H281DRAFT_03547at 48.388 kb on - strand, within H281DRAFT_03547at 48.388 kb on - strand, within H281DRAFT_03547at 48.409 kb on + strand, within H281DRAFT_03547at 48.410 kb on - strand, within H281DRAFT_03547at 48.428 kb on + strandat 48.428 kb on + strand, within H281DRAFT_03547at 48.429 kb on - strand, within H281DRAFT_03547at 48.429 kb on - strand, within H281DRAFT_03547at 48.662 kb on - strandat 48.741 kb on + strandat 48.741 kb on + strandat 48.742 kb on - strandat 48.775 kb on + strandat 48.775 kb on + strandat 48.775 kb on + strandat 48.776 kb on - strandat 48.776 kb on - strandat 48.776 kb on - strandat 48.836 kb on + strandat 48.836 kb on + strandat 48.836 kb on + strandat 48.836 kb on + strandat 48.837 kb on - strandat 48.837 kb on - strandat 48.840 kb on - strandat 48.869 kb on + strandat 48.869 kb on + strandat 48.930 kb on + strandat 48.966 kb on + strandat 48.967 kb on - strandat 48.967 kb on - strandat 48.967 kb on - strandat 49.087 kb on - strandat 49.186 kb on - strandat 49.317 kb on + strand, within H281DRAFT_03548at 49.318 kb on - strand, within H281DRAFT_03548at 49.318 kb on - strand, within H281DRAFT_03548at 49.407 kb on + strand, within H281DRAFT_03548at 49.408 kb on - strand, within H281DRAFT_03548at 49.408 kb on - strand, within H281DRAFT_03548at 49.460 kb on + strand, within H281DRAFT_03548at 49.460 kb on + strand, within H281DRAFT_03548at 49.460 kb on + strand, within H281DRAFT_03548at 49.461 kb on - strand, within H281DRAFT_03548at 49.461 kb on - strand, within H281DRAFT_03548at 49.461 kb on - strand, within H281DRAFT_03548at 49.461 kb on - strand, within H281DRAFT_03548at 49.464 kb on + strand, within H281DRAFT_03548at 49.464 kb on + strand, within H281DRAFT_03548at 49.464 kb on + strand, within H281DRAFT_03548at 49.465 kb on - strand, within H281DRAFT_03548at 49.524 kb on + strand, within H281DRAFT_03548at 49.524 kb on + strand, within H281DRAFT_03548at 49.525 kb on - strand, within H281DRAFT_03548at 49.538 kb on + strand, within H281DRAFT_03548at 49.538 kb on + strand, within H281DRAFT_03548at 49.538 kb on + strand, within H281DRAFT_03548at 49.539 kb on - strand, within H281DRAFT_03548at 49.539 kb on - strand, within H281DRAFT_03548at 49.539 kb on - strand, within H281DRAFT_03548at 49.767 kb on + strand, within H281DRAFT_03548at 49.767 kb on + strand, within H281DRAFT_03548at 49.911 kb on + strand, within H281DRAFT_03548at 49.911 kb on + strand, within H281DRAFT_03548at 49.911 kb on + strand, within H281DRAFT_03548at 49.911 kb on + strand, within H281DRAFT_03548at 49.911 kb on + strand, within H281DRAFT_03548at 49.913 kb on + strand, within H281DRAFT_03548at 50.115 kb on - strand, within H281DRAFT_03548at 50.127 kb on + strand, within H281DRAFT_03548at 50.127 kb on + strand, within H281DRAFT_03548at 50.328 kb on - strand, within H281DRAFT_03548at 50.394 kb on - strand, within H281DRAFT_03548at 50.449 kb on - strandat 50.512 kb on - strandat 50.514 kb on + strandat 50.532 kb on + strandat 50.788 kb on + strand, within H281DRAFT_03549at 50.904 kb on + strand, within H281DRAFT_03549at 50.934 kb on + strand, within H281DRAFT_03549at 50.935 kb on - strand, within H281DRAFT_03549at 51.201 kb on + strandat 51.202 kb on - strandat 51.202 kb on - strandat 51.209 kb on + strandat 51.209 kb on + strandat 51.209 kb on + strandat 51.315 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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48,343 + H281DRAFT_03547 0.68 +0.4
48,343 + H281DRAFT_03547 0.68 -1.0
48,344 - H281DRAFT_03547 0.69 -0.2
48,388 - H281DRAFT_03547 0.72 -0.7
48,388 - H281DRAFT_03547 0.72 -0.4
48,409 + H281DRAFT_03547 0.73 +0.2
48,410 - H281DRAFT_03547 0.73 -0.5
48,428 + +1.8
48,428 + H281DRAFT_03547 0.74 +0.4
48,429 - H281DRAFT_03547 0.74 +0.5
48,429 - H281DRAFT_03547 0.74 -0.5
48,662 - +0.1
48,741 + +1.0
48,741 + +0.3
48,742 - -0.1
48,775 + -0.2
48,775 + +0.5
48,775 + -0.3
48,776 - +1.4
48,776 - +1.4
48,776 - +0.0
48,836 + +0.8
48,836 + -0.9
48,836 + +0.3
48,836 + -1.2
48,837 - +1.1
48,837 - +0.4
48,840 - -0.4
48,869 + -0.1
48,869 + +0.2
48,930 + -0.5
48,966 + -2.5
48,967 - -0.2
48,967 - -1.4
48,967 - +0.2
49,087 - -1.7
49,186 - -0.1
49,317 + H281DRAFT_03548 0.13 -1.2
49,318 - H281DRAFT_03548 0.13 +0.3
49,318 - H281DRAFT_03548 0.13 -0.0
49,407 + H281DRAFT_03548 0.19 -0.7
49,408 - H281DRAFT_03548 0.20 -0.4
49,408 - H281DRAFT_03548 0.20 +0.5
49,460 + H281DRAFT_03548 0.23 +0.1
49,460 + H281DRAFT_03548 0.23 -2.7
49,460 + H281DRAFT_03548 0.23 -3.0
49,461 - H281DRAFT_03548 0.23 +0.7
49,461 - H281DRAFT_03548 0.23 +1.3
49,461 - H281DRAFT_03548 0.23 +0.5
49,461 - H281DRAFT_03548 0.23 -1.3
49,464 + H281DRAFT_03548 0.24 -0.9
49,464 + H281DRAFT_03548 0.24 +0.0
49,464 + H281DRAFT_03548 0.24 -0.5
49,465 - H281DRAFT_03548 0.24 -0.8
49,524 + H281DRAFT_03548 0.28 -0.5
49,524 + H281DRAFT_03548 0.28 -2.4
49,525 - H281DRAFT_03548 0.28 +0.3
49,538 + H281DRAFT_03548 0.29 -0.5
49,538 + H281DRAFT_03548 0.29 -0.9
49,538 + H281DRAFT_03548 0.29 +0.2
49,539 - H281DRAFT_03548 0.29 -0.2
49,539 - H281DRAFT_03548 0.29 -0.7
49,539 - H281DRAFT_03548 0.29 -0.7
49,767 + H281DRAFT_03548 0.45 -0.3
49,767 + H281DRAFT_03548 0.45 -0.9
49,911 + H281DRAFT_03548 0.55 -0.1
49,911 + H281DRAFT_03548 0.55 +1.4
49,911 + H281DRAFT_03548 0.55 -3.4
49,911 + H281DRAFT_03548 0.55 +0.0
49,911 + H281DRAFT_03548 0.55 -0.3
49,913 + H281DRAFT_03548 0.56 -0.4
50,115 - H281DRAFT_03548 0.70 -0.0
50,127 + H281DRAFT_03548 0.71 -1.0
50,127 + H281DRAFT_03548 0.71 -0.3
50,328 - H281DRAFT_03548 0.85 -0.3
50,394 - H281DRAFT_03548 0.90 +0.7
50,449 - -0.8
50,512 - -0.6
50,514 + -0.6
50,532 + +0.7
50,788 + H281DRAFT_03549 0.38 +1.1
50,904 + H281DRAFT_03549 0.66 -0.8
50,934 + H281DRAFT_03549 0.74 -0.5
50,935 - H281DRAFT_03549 0.74 -0.7
51,201 + +1.2
51,202 - -0.6
51,202 - +0.1
51,209 + +0.5
51,209 + +0.8
51,209 + +0.7
51,315 + -0.5

Or see this region's nucleotide sequence