Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03373 and H281DRAFT_03374 are separated by 794 nucleotides H281DRAFT_03374 and H281DRAFT_03375 are separated by 526 nucleotides
H281DRAFT_03373: H281DRAFT_03373 - Low temperature requirement protein LtrA, at 435,703 to 436,815
_03373
H281DRAFT_03374: H281DRAFT_03374 - hypothetical protein, at 437,610 to 439,712
_03374
H281DRAFT_03375: H281DRAFT_03375 - Dimerisation domain-containing protein, at 440,239 to 441,300
_03375
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2 at 436.613 kb on + strand, within H281DRAFT_03373 at 436.716 kb on + strand at 436.779 kb on + strand at 436.970 kb on + strand at 436.977 kb on + strand at 437.224 kb on + strand at 437.225 kb on - strand at 437.389 kb on + strand at 437.589 kb on + strand at 437.637 kb on + strand at 437.638 kb on - strand at 437.666 kb on - strand at 438.189 kb on - strand, within H281DRAFT_03374 at 438.264 kb on - strand, within H281DRAFT_03374 at 438.359 kb on - strand, within H281DRAFT_03374 at 438.473 kb on - strand, within H281DRAFT_03374 at 439.010 kb on - strand, within H281DRAFT_03374 at 439.018 kb on - strand, within H281DRAFT_03374 at 439.920 kb on + strand at 440.241 kb on - strand at 440.472 kb on - strand, within H281DRAFT_03375 at 440.699 kb on - strand, within H281DRAFT_03375 at 440.704 kb on + strand, within H281DRAFT_03375 at 440.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 436,613 + H281DRAFT_03373 0.82 +0.6 436,716 + +0.7 436,779 + +0.3 436,970 + +1.4 436,977 + -0.6 437,224 + +0.3 437,225 - -1.8 437,389 + +1.8 437,589 + -0.7 437,637 + +0.1 437,638 - +0.5 437,666 - -0.1 438,189 - H281DRAFT_03374 0.28 -1.2 438,264 - H281DRAFT_03374 0.31 -1.5 438,359 - H281DRAFT_03374 0.36 -0.3 438,473 - H281DRAFT_03374 0.41 +0.4 439,010 - H281DRAFT_03374 0.67 +0.3 439,018 - H281DRAFT_03374 0.67 -0.1 439,920 + -0.7 440,241 - -0.2 440,472 - H281DRAFT_03375 0.22 +1.7 440,699 - H281DRAFT_03375 0.43 -0.1 440,704 + H281DRAFT_03375 0.44 +0.3 440,704 + +0.9
Or see this region's nucleotide sequence