Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03143 and H281DRAFT_03144 are separated by 335 nucleotides H281DRAFT_03144 and H281DRAFT_03145 overlap by 4 nucleotides H281DRAFT_03145 and H281DRAFT_03146 are separated by 170 nucleotides
H281DRAFT_03143: H281DRAFT_03143 - FAD/FMN-containing dehydrogenase, at 181,018 to 182,406
_03143
H281DRAFT_03144: H281DRAFT_03144 - putative phosphoesterase, at 182,742 to 183,404
_03144
H281DRAFT_03145: H281DRAFT_03145 - ATP-dependent helicase Lhr and Lhr-like helicase, at 183,401 to 186,058
_03145
H281DRAFT_03146: H281DRAFT_03146 - Predicted amidohydrolase, at 186,229 to 187,116
_03146
Position (kb) 183
184
185
186
187 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 182.462 kb on + strand at 182.516 kb on + strand at 182.516 kb on + strand at 182.704 kb on + strand at 182.705 kb on - strand at 182.948 kb on - strand, within H281DRAFT_03144 at 182.995 kb on - strand, within H281DRAFT_03144 at 183.016 kb on + strand, within H281DRAFT_03144 at 183.494 kb on + strand at 183.495 kb on - strand at 183.495 kb on - strand at 183.495 kb on - strand at 183.606 kb on - strand at 183.632 kb on + strand at 183.635 kb on + strand at 183.664 kb on + strand at 183.670 kb on - strand, within H281DRAFT_03145 at 183.670 kb on - strand, within H281DRAFT_03145 at 183.806 kb on + strand, within H281DRAFT_03145 at 183.806 kb on + strand, within H281DRAFT_03145 at 183.806 kb on + strand, within H281DRAFT_03145 at 184.128 kb on + strand, within H281DRAFT_03145 at 184.128 kb on + strand, within H281DRAFT_03145 at 184.129 kb on - strand, within H281DRAFT_03145 at 184.346 kb on + strand, within H281DRAFT_03145 at 184.374 kb on + strand, within H281DRAFT_03145 at 184.375 kb on - strand, within H281DRAFT_03145 at 184.458 kb on + strand, within H281DRAFT_03145 at 184.491 kb on + strand, within H281DRAFT_03145 at 184.501 kb on - strand, within H281DRAFT_03145 at 184.906 kb on + strand, within H281DRAFT_03145 at 184.906 kb on + strand, within H281DRAFT_03145 at 184.910 kb on + strand, within H281DRAFT_03145 at 184.910 kb on + strand, within H281DRAFT_03145 at 184.910 kb on + strand, within H281DRAFT_03145 at 184.910 kb on + strand, within H281DRAFT_03145 at 184.911 kb on - strand, within H281DRAFT_03145 at 184.911 kb on - strand, within H281DRAFT_03145 at 184.911 kb on - strand, within H281DRAFT_03145 at 184.911 kb on - strand, within H281DRAFT_03145 at 184.917 kb on - strand, within H281DRAFT_03145 at 184.923 kb on - strand, within H281DRAFT_03145 at 185.084 kb on - strand, within H281DRAFT_03145 at 185.134 kb on + strand, within H281DRAFT_03145 at 185.174 kb on - strand, within H281DRAFT_03145 at 185.657 kb on - strand, within H281DRAFT_03145 at 186.072 kb on + strand at 186.072 kb on + strand at 186.073 kb on - strand at 186.133 kb on + strand at 186.134 kb on - strand at 186.151 kb on + strand at 186.152 kb on - strand at 186.152 kb on - strand at 186.225 kb on + strand at 186.226 kb on - strand at 186.320 kb on + strand, within H281DRAFT_03146 at 186.321 kb on - strand, within H281DRAFT_03146 at 186.595 kb on + strand, within H281DRAFT_03146 at 186.607 kb on + strand, within H281DRAFT_03146 at 186.607 kb on + strand, within H281DRAFT_03146 at 186.614 kb on - strand, within H281DRAFT_03146 at 186.807 kb on + strand, within H281DRAFT_03146 at 186.807 kb on + strand, within H281DRAFT_03146 at 186.844 kb on + strand, within H281DRAFT_03146 at 186.844 kb on + strand, within H281DRAFT_03146 at 186.845 kb on - strand, within H281DRAFT_03146 at 186.845 kb on - strand, within H281DRAFT_03146 at 186.845 kb on - strand, within H281DRAFT_03146 at 186.889 kb on - strand, within H281DRAFT_03146 at 186.919 kb on + strand, within H281DRAFT_03146
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 182,462 + +0.8 182,516 + +0.4 182,516 + -0.3 182,704 + +0.5 182,705 - -0.1 182,948 - H281DRAFT_03144 0.31 -0.2 182,995 - H281DRAFT_03144 0.38 -0.3 183,016 + H281DRAFT_03144 0.41 -2.2 183,494 + +0.1 183,495 - +1.1 183,495 - +0.5 183,495 - +0.5 183,606 - -0.2 183,632 + +0.1 183,635 + -1.1 183,664 + -0.3 183,670 - H281DRAFT_03145 0.10 +0.2 183,670 - H281DRAFT_03145 0.10 -0.8 183,806 + H281DRAFT_03145 0.15 +0.2 183,806 + H281DRAFT_03145 0.15 +1.3 183,806 + H281DRAFT_03145 0.15 +1.6 184,128 + H281DRAFT_03145 0.27 -1.7 184,128 + H281DRAFT_03145 0.27 +1.2 184,129 - H281DRAFT_03145 0.27 +1.0 184,346 + H281DRAFT_03145 0.36 +0.9 184,374 + H281DRAFT_03145 0.37 +0.5 184,375 - H281DRAFT_03145 0.37 +1.5 184,458 + H281DRAFT_03145 0.40 +0.3 184,491 + H281DRAFT_03145 0.41 -0.9 184,501 - H281DRAFT_03145 0.41 +1.4 184,906 + H281DRAFT_03145 0.57 -0.0 184,906 + H281DRAFT_03145 0.57 -0.5 184,910 + H281DRAFT_03145 0.57 -0.7 184,910 + H281DRAFT_03145 0.57 +0.8 184,910 + H281DRAFT_03145 0.57 -0.5 184,910 + H281DRAFT_03145 0.57 -1.4 184,911 - H281DRAFT_03145 0.57 -1.5 184,911 - H281DRAFT_03145 0.57 +0.5 184,911 - H281DRAFT_03145 0.57 +0.7 184,911 - H281DRAFT_03145 0.57 +0.6 184,917 - H281DRAFT_03145 0.57 +0.8 184,923 - H281DRAFT_03145 0.57 +0.4 185,084 - H281DRAFT_03145 0.63 +0.6 185,134 + H281DRAFT_03145 0.65 +0.4 185,174 - H281DRAFT_03145 0.67 -3.9 185,657 - H281DRAFT_03145 0.85 -0.7 186,072 + +0.5 186,072 + +0.7 186,073 - -0.5 186,133 + +0.5 186,134 - +1.1 186,151 + +0.0 186,152 - -1.0 186,152 - +0.5 186,225 + +0.9 186,226 - +1.0 186,320 + H281DRAFT_03146 0.10 +0.2 186,321 - H281DRAFT_03146 0.10 -0.0 186,595 + H281DRAFT_03146 0.41 -0.1 186,607 + H281DRAFT_03146 0.43 -0.9 186,607 + H281DRAFT_03146 0.43 +0.5 186,614 - H281DRAFT_03146 0.43 -0.1 186,807 + H281DRAFT_03146 0.65 -0.3 186,807 + H281DRAFT_03146 0.65 +0.1 186,844 + H281DRAFT_03146 0.69 -0.0 186,844 + H281DRAFT_03146 0.69 -1.1 186,845 - H281DRAFT_03146 0.69 -0.5 186,845 - H281DRAFT_03146 0.69 -0.3 186,845 - H281DRAFT_03146 0.69 +0.2 186,889 - H281DRAFT_03146 0.74 -0.1 186,919 + H281DRAFT_03146 0.78 +0.1
Or see this region's nucleotide sequence