Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02853 and H281DRAFT_02854 are separated by 146 nucleotides H281DRAFT_02854 and H281DRAFT_02855 are separated by 47 nucleotides H281DRAFT_02855 and H281DRAFT_02856 are separated by 272 nucleotides
H281DRAFT_02853: H281DRAFT_02853 - alpha,alpha-trehalase, at 446,493 to 448,187
_02853
H281DRAFT_02854: H281DRAFT_02854 - Alkylated DNA repair dioxygenase AlkB, at 448,334 to 448,915
_02854
H281DRAFT_02855: H281DRAFT_02855 - carbonic anhydrase, at 448,963 to 449,640
_02855
H281DRAFT_02856: H281DRAFT_02856 - Protein of unknown function (DUF1488), at 449,913 to 450,185
_02856
Position (kb) 448
449 Strain fitness (log2 ratio) -2
-1
0
1 at 447.365 kb on + strand, within H281DRAFT_02853 at 447.430 kb on + strand, within H281DRAFT_02853 at 447.430 kb on + strand, within H281DRAFT_02853 at 447.430 kb on + strand, within H281DRAFT_02853 at 447.430 kb on + strand, within H281DRAFT_02853 at 447.430 kb on + strand, within H281DRAFT_02853 at 447.431 kb on - strand at 447.431 kb on - strand, within H281DRAFT_02853 at 447.431 kb on - strand, within H281DRAFT_02853 at 447.741 kb on + strand, within H281DRAFT_02853 at 447.862 kb on + strand, within H281DRAFT_02853 at 447.862 kb on + strand, within H281DRAFT_02853 at 447.894 kb on + strand, within H281DRAFT_02853 at 447.895 kb on - strand, within H281DRAFT_02853 at 447.973 kb on - strand, within H281DRAFT_02853 at 448.147 kb on + strand at 448.236 kb on + strand at 448.275 kb on + strand at 448.297 kb on - strand at 448.401 kb on + strand, within H281DRAFT_02854 at 448.406 kb on + strand, within H281DRAFT_02854 at 448.471 kb on - strand, within H281DRAFT_02854 at 448.484 kb on + strand, within H281DRAFT_02854 at 448.485 kb on - strand, within H281DRAFT_02854 at 448.499 kb on + strand, within H281DRAFT_02854 at 448.500 kb on - strand, within H281DRAFT_02854 at 448.500 kb on - strand, within H281DRAFT_02854 at 448.791 kb on + strand, within H281DRAFT_02854 at 449.187 kb on - strand, within H281DRAFT_02855 at 449.315 kb on - strand, within H281DRAFT_02855 at 449.623 kb on - strand at 449.663 kb on + strand at 449.664 kb on - strand at 449.705 kb on - strand at 449.765 kb on - strand at 449.848 kb on - strand at 449.914 kb on + strand at 449.915 kb on - strand at 449.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 447,365 + H281DRAFT_02853 0.51 +0.5 447,430 + H281DRAFT_02853 0.55 -0.1 447,430 + H281DRAFT_02853 0.55 -0.9 447,430 + H281DRAFT_02853 0.55 +0.5 447,430 + H281DRAFT_02853 0.55 +0.1 447,430 + H281DRAFT_02853 0.55 -2.2 447,431 - -1.3 447,431 - H281DRAFT_02853 0.55 -0.2 447,431 - H281DRAFT_02853 0.55 +0.6 447,741 + H281DRAFT_02853 0.74 +0.2 447,862 + H281DRAFT_02853 0.81 -0.3 447,862 + H281DRAFT_02853 0.81 -0.2 447,894 + H281DRAFT_02853 0.83 -1.3 447,895 - H281DRAFT_02853 0.83 -0.4 447,973 - H281DRAFT_02853 0.87 -0.2 448,147 + +0.2 448,236 + +0.2 448,275 + -1.8 448,297 - -0.8 448,401 + H281DRAFT_02854 0.12 +0.9 448,406 + H281DRAFT_02854 0.12 +1.0 448,471 - H281DRAFT_02854 0.24 +0.5 448,484 + H281DRAFT_02854 0.26 +0.6 448,485 - H281DRAFT_02854 0.26 -0.2 448,499 + H281DRAFT_02854 0.28 -0.8 448,500 - H281DRAFT_02854 0.29 +0.2 448,500 - H281DRAFT_02854 0.29 -0.1 448,791 + H281DRAFT_02854 0.79 -0.2 449,187 - H281DRAFT_02855 0.33 +0.1 449,315 - H281DRAFT_02855 0.52 -1.5 449,623 - +0.5 449,663 + +0.4 449,664 - -2.0 449,705 - -0.3 449,765 - -0.1 449,848 - +0.4 449,914 + -0.3 449,915 - -1.3 449,915 - -0.2
Or see this region's nucleotide sequence