Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01926

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01924 and H281DRAFT_01925 are separated by 30 nucleotidesH281DRAFT_01925 and H281DRAFT_01926 overlap by 4 nucleotidesH281DRAFT_01926 and H281DRAFT_01927 are separated by 178 nucleotides H281DRAFT_01924: H281DRAFT_01924 - lipopolysaccharide export system protein LptC, at 41,871 to 42,470 _01924 H281DRAFT_01925: H281DRAFT_01925 - lipopolysaccharide export system protein LptA, at 42,501 to 43,172 _01925 H281DRAFT_01926: H281DRAFT_01926 - lipopolysaccharide export system ATP-binding protein, at 43,169 to 43,954 _01926 H281DRAFT_01927: H281DRAFT_01927 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 44,133 to 45,647 _01927 Position (kb) 43 44Strain fitness (log2 ratio) -1 0 1 2 3at 42.477 kb on + strandat 43.952 kb on + strandat 43.952 kb on + strandat 43.952 kb on + strandat 43.952 kb on + strandat 43.952 kb on + strandat 43.952 kb on + strandat 43.952 kb on + strandat 43.952 kb on + strandat 43.953 kb on - strandat 43.953 kb on - strandat 43.953 kb on - strandat 43.953 kb on - strandat 44.089 kb on + strandat 44.089 kb on + strandat 44.089 kb on + strandat 44.112 kb on + strandat 44.112 kb on + strandat 44.113 kb on - strandat 44.113 kb on - strandat 44.158 kb on + strandat 44.334 kb on - strand, within H281DRAFT_01927at 44.438 kb on - strand, within H281DRAFT_01927at 44.446 kb on - strand, within H281DRAFT_01927at 44.502 kb on + strand, within H281DRAFT_01927at 44.503 kb on - strand, within H281DRAFT_01927at 44.539 kb on + strand, within H281DRAFT_01927at 44.567 kb on + strand, within H281DRAFT_01927at 44.567 kb on + strand, within H281DRAFT_01927at 44.567 kb on + strand, within H281DRAFT_01927at 44.568 kb on - strand, within H281DRAFT_01927at 44.568 kb on - strand, within H281DRAFT_01927at 44.568 kb on - strand, within H281DRAFT_01927at 44.568 kb on - strand, within H281DRAFT_01927at 44.673 kb on + strand, within H281DRAFT_01927at 44.674 kb on - strand, within H281DRAFT_01927at 44.768 kb on + strand, within H281DRAFT_01927at 44.768 kb on + strand, within H281DRAFT_01927at 44.769 kb on - strand, within H281DRAFT_01927at 44.769 kb on - strand, within H281DRAFT_01927at 44.827 kb on + strand, within H281DRAFT_01927at 44.827 kb on + strand, within H281DRAFT_01927at 44.827 kb on + strand, within H281DRAFT_01927at 44.828 kb on - strand, within H281DRAFT_01927at 44.883 kb on + strand, within H281DRAFT_01927at 44.883 kb on + strand, within H281DRAFT_01927

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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42,477 + +0.8
43,952 + -0.0
43,952 + +1.1
43,952 + -0.6
43,952 + +0.3
43,952 + -0.9
43,952 + -0.1
43,952 + +0.3
43,952 + -0.3
43,953 - -0.1
43,953 - +0.3
43,953 - +0.1
43,953 - +1.0
44,089 + -0.4
44,089 + -0.3
44,089 + +0.1
44,112 + +0.8
44,112 + +0.7
44,113 - +0.2
44,113 - -0.1
44,158 + +2.6
44,334 - H281DRAFT_01927 0.13 +3.1
44,438 - H281DRAFT_01927 0.20 +3.0
44,446 - H281DRAFT_01927 0.21 +2.7
44,502 + H281DRAFT_01927 0.24 +2.6
44,503 - H281DRAFT_01927 0.24 +2.7
44,539 + H281DRAFT_01927 0.27 +2.5
44,567 + H281DRAFT_01927 0.29 +3.0
44,567 + H281DRAFT_01927 0.29 +2.2
44,567 + H281DRAFT_01927 0.29 +2.6
44,568 - H281DRAFT_01927 0.29 +2.5
44,568 - H281DRAFT_01927 0.29 +2.6
44,568 - H281DRAFT_01927 0.29 +2.7
44,568 - H281DRAFT_01927 0.29 +2.1
44,673 + H281DRAFT_01927 0.36 +2.2
44,674 - H281DRAFT_01927 0.36 +2.6
44,768 + H281DRAFT_01927 0.42 +2.6
44,768 + H281DRAFT_01927 0.42 +2.9
44,769 - H281DRAFT_01927 0.42 +2.4
44,769 - H281DRAFT_01927 0.42 +2.6
44,827 + H281DRAFT_01927 0.46 +2.9
44,827 + H281DRAFT_01927 0.46 +2.4
44,827 + H281DRAFT_01927 0.46 +2.7
44,828 - H281DRAFT_01927 0.46 +2.2
44,883 + H281DRAFT_01927 0.50 +1.8
44,883 + H281DRAFT_01927 0.50 +2.4

Or see this region's nucleotide sequence