Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01797 and H281DRAFT_01798 are separated by 300 nucleotides H281DRAFT_01798 and H281DRAFT_01799 overlap by 1 nucleotides H281DRAFT_01799 and H281DRAFT_01800 are separated by 166 nucleotides
H281DRAFT_01797: H281DRAFT_01797 - 3',5'-cyclic AMP phosphodiesterase CpdA, at 697,827 to 698,774
_01797
H281DRAFT_01798: H281DRAFT_01798 - Transmembrane transcriptional regulator (anti-sigma factor RsiW), at 699,075 to 699,863
_01798
H281DRAFT_01799: H281DRAFT_01799 - RNA polymerase sigma-70 factor, ECF subfamily, at 699,863 to 700,402
_01799
H281DRAFT_01800: H281DRAFT_01800 - transcriptional regulator, LysR family, at 700,569 to 701,471
_01800
Position (kb) 699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 698.306 kb on - strand, within H281DRAFT_01797 at 698.733 kb on + strand at 698.774 kb on + strand at 698.838 kb on - strand at 699.051 kb on + strand at 699.188 kb on - strand at 699.401 kb on + strand, within H281DRAFT_01798 at 699.402 kb on - strand, within H281DRAFT_01798 at 699.746 kb on - strand, within H281DRAFT_01798 at 700.126 kb on + strand, within H281DRAFT_01799 at 700.312 kb on + strand, within H281DRAFT_01799 at 700.387 kb on + strand at 700.504 kb on - strand at 700.512 kb on - strand at 700.568 kb on - strand at 700.571 kb on - strand at 700.571 kb on - strand at 700.571 kb on - strand at 700.684 kb on + strand, within H281DRAFT_01800 at 700.742 kb on - strand, within H281DRAFT_01800
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 698,306 - H281DRAFT_01797 0.51 -1.2 698,733 + -1.1 698,774 + +0.2 698,838 - +0.3 699,051 + +0.2 699,188 - -1.3 699,401 + H281DRAFT_01798 0.41 -2.3 699,402 - H281DRAFT_01798 0.41 -3.2 699,746 - H281DRAFT_01798 0.85 -2.3 700,126 + H281DRAFT_01799 0.49 +0.8 700,312 + H281DRAFT_01799 0.83 +0.4 700,387 + -0.5 700,504 - -0.0 700,512 - +0.0 700,568 - -0.2 700,571 - +1.2 700,571 - +0.6 700,571 - +0.5 700,684 + H281DRAFT_01800 0.13 +0.3 700,742 - H281DRAFT_01800 0.19 -1.5
Or see this region's nucleotide sequence