Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01077

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01075 and H281DRAFT_01076 overlap by 4 nucleotidesH281DRAFT_01076 and H281DRAFT_01077 are separated by 39 nucleotidesH281DRAFT_01077 and H281DRAFT_01078 overlap by 4 nucleotidesH281DRAFT_01078 and H281DRAFT_01079 are separated by 26 nucleotides H281DRAFT_01075: H281DRAFT_01075 - benzoate 1,2-dioxygenase, alpha subunit, at 1,207,707 to 1,209,065 _01075 H281DRAFT_01076: H281DRAFT_01076 - benzoate/toluate 1,2-dioxygenase beta subunit, at 1,209,062 to 1,209,550 _01076 H281DRAFT_01077: H281DRAFT_01077 - benzoate/toluate 1,2-dioxygenase reductase subunit, at 1,209,590 to 1,210,612 _01077 H281DRAFT_01078: H281DRAFT_01078 - dihydroxycyclohexadiene carboxylate dehydrogenase, at 1,210,609 to 1,211,385 _01078 H281DRAFT_01079: H281DRAFT_01079 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 1,211,412 to 1,211,810 _01079 Position (kb) 1209 1210 1211Strain fitness (log2 ratio) -1 0 1 2at 1208.798 kb on - strand, within H281DRAFT_01075at 1208.798 kb on - strand, within H281DRAFT_01075at 1209.515 kb on + strandat 1209.580 kb on - strandat 1209.600 kb on - strandat 1209.780 kb on - strand, within H281DRAFT_01077at 1209.783 kb on + strand, within H281DRAFT_01077at 1209.783 kb on + strand, within H281DRAFT_01077at 1210.490 kb on + strand, within H281DRAFT_01077at 1210.638 kb on - strandat 1210.804 kb on + strand, within H281DRAFT_01078at 1210.805 kb on - strand, within H281DRAFT_01078at 1211.339 kb on - strandat 1211.503 kb on + strand, within H281DRAFT_01079at 1211.504 kb on - strand, within H281DRAFT_01079at 1211.505 kb on + strand, within H281DRAFT_01079at 1211.505 kb on + strand, within H281DRAFT_01079at 1211.505 kb on + strand, within H281DRAFT_01079at 1211.506 kb on - strand, within H281DRAFT_01079at 1211.600 kb on - strand, within H281DRAFT_01079

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,208,798 - H281DRAFT_01075 0.80 -0.8
1,208,798 - H281DRAFT_01075 0.80 +0.9
1,209,515 + +0.2
1,209,580 - -0.0
1,209,600 - +0.6
1,209,780 - H281DRAFT_01077 0.19 +0.8
1,209,783 + H281DRAFT_01077 0.19 -1.1
1,209,783 + H281DRAFT_01077 0.19 +0.7
1,210,490 + H281DRAFT_01077 0.88 +0.8
1,210,638 - +2.3
1,210,804 + H281DRAFT_01078 0.25 +0.4
1,210,805 - H281DRAFT_01078 0.25 +0.8
1,211,339 - -1.5
1,211,503 + H281DRAFT_01079 0.23 -0.1
1,211,504 - H281DRAFT_01079 0.23 -1.2
1,211,505 + H281DRAFT_01079 0.23 +0.8
1,211,505 + H281DRAFT_01079 0.23 -0.4
1,211,505 + H281DRAFT_01079 0.23 +0.1
1,211,506 - H281DRAFT_01079 0.24 -0.7
1,211,600 - H281DRAFT_01079 0.47 -0.4

Or see this region's nucleotide sequence