Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00545

Experiment: PYE_noCalcium 25C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00544 and CCNA_00545 are separated by 70 nucleotidesCCNA_00545 and CCNA_00546 are separated by 123 nucleotides CCNA_00544: CCNA_00544 - acetyl-CoA acetyltransferase, at 562,579 to 563,754 _00544 CCNA_00545: CCNA_00545 - acetoacetyl-CoA reductase, at 563,825 to 564,547 _00545 CCNA_00546: CCNA_00546 - hypothetical protein, at 564,671 to 565,453 _00546 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 562.828 kb on - strand, within CCNA_00544at 562.844 kb on + strand, within CCNA_00544at 562.847 kb on - strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.852 kb on - strand, within CCNA_00544at 562.857 kb on - strand, within CCNA_00544at 562.891 kb on + strand, within CCNA_00544at 562.909 kb on - strand, within CCNA_00544at 562.926 kb on - strand, within CCNA_00544at 562.947 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.957 kb on - strand, within CCNA_00544at 562.957 kb on - strand, within CCNA_00544at 563.012 kb on - strand, within CCNA_00544at 563.047 kb on + strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.056 kb on + strand, within CCNA_00544at 563.056 kb on + strand, within CCNA_00544at 563.064 kb on - strand, within CCNA_00544at 563.078 kb on + strand, within CCNA_00544at 563.095 kb on + strand, within CCNA_00544at 563.103 kb on - strand, within CCNA_00544at 563.173 kb on + strand, within CCNA_00544at 563.199 kb on + strand, within CCNA_00544at 563.208 kb on - strand, within CCNA_00544at 563.221 kb on + strand, within CCNA_00544at 563.222 kb on - strand, within CCNA_00544at 563.229 kb on - strand, within CCNA_00544at 563.257 kb on + strand, within CCNA_00544at 563.317 kb on + strand, within CCNA_00544at 563.317 kb on + strand, within CCNA_00544at 563.325 kb on - strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.354 kb on + strand, within CCNA_00544at 563.362 kb on - strand, within CCNA_00544at 563.391 kb on + strand, within CCNA_00544at 563.391 kb on + strand, within CCNA_00544at 563.399 kb on - strand, within CCNA_00544at 563.399 kb on - strand, within CCNA_00544at 563.399 kb on - strand, within CCNA_00544at 563.423 kb on - strand, within CCNA_00544at 563.494 kb on + strand, within CCNA_00544at 563.507 kb on + strand, within CCNA_00544at 563.521 kb on + strand, within CCNA_00544at 563.521 kb on + strand, within CCNA_00544at 563.529 kb on - strand, within CCNA_00544at 563.542 kb on + strand, within CCNA_00544at 563.545 kb on - strand, within CCNA_00544at 563.549 kb on - strand, within CCNA_00544at 563.562 kb on - strand, within CCNA_00544at 563.574 kb on - strand, within CCNA_00544at 563.575 kb on - strand, within CCNA_00544at 563.619 kb on + strand, within CCNA_00544at 563.638 kb on - strandat 563.649 kb on + strandat 563.692 kb on + strandat 563.714 kb on - strandat 563.720 kb on + strandat 563.746 kb on - strandat 563.748 kb on + strandat 563.748 kb on + strandat 563.748 kb on + strandat 563.748 kb on + strandat 563.756 kb on - strandat 563.760 kb on + strandat 563.760 kb on + strandat 563.760 kb on + strandat 563.760 kb on + strandat 563.768 kb on - strandat 563.768 kb on - strandat 563.942 kb on + strand, within CCNA_00545at 563.942 kb on + strand, within CCNA_00545at 563.952 kb on + strand, within CCNA_00545at 563.983 kb on + strand, within CCNA_00545at 563.983 kb on + strandat 563.983 kb on - strand, within CCNA_00545at 564.007 kb on + strand, within CCNA_00545at 564.015 kb on - strand, within CCNA_00545at 564.029 kb on + strand, within CCNA_00545at 564.036 kb on - strand, within CCNA_00545at 564.095 kb on - strandat 564.097 kb on + strand, within CCNA_00545at 564.100 kb on + strand, within CCNA_00545at 564.108 kb on + strand, within CCNA_00545at 564.108 kb on + strand, within CCNA_00545at 564.113 kb on + strand, within CCNA_00545at 564.116 kb on - strand, within CCNA_00545at 564.116 kb on - strand, within CCNA_00545at 564.120 kb on + strand, within CCNA_00545at 564.120 kb on + strand, within CCNA_00545at 564.121 kb on + strand, within CCNA_00545at 564.128 kb on - strand, within CCNA_00545at 564.149 kb on - strand, within CCNA_00545at 564.183 kb on - strand, within CCNA_00545at 564.183 kb on - strand, within CCNA_00545at 564.212 kb on + strand, within CCNA_00545at 564.220 kb on - strand, within CCNA_00545at 564.225 kb on - strand, within CCNA_00545at 564.225 kb on - strand, within CCNA_00545at 564.242 kb on + strand, within CCNA_00545at 564.256 kb on + strand, within CCNA_00545at 564.276 kb on + strand, within CCNA_00545at 564.290 kb on + strand, within CCNA_00545at 564.302 kb on + strand, within CCNA_00545at 564.303 kb on + strand, within CCNA_00545at 564.310 kb on - strand, within CCNA_00545at 564.313 kb on + strand, within CCNA_00545at 564.320 kb on + strand, within CCNA_00545at 564.320 kb on + strand, within CCNA_00545at 564.328 kb on - strand, within CCNA_00545at 564.344 kb on - strand, within CCNA_00545at 564.434 kb on + strand, within CCNA_00545at 564.502 kb on - strandat 564.502 kb on - strandat 564.507 kb on + strandat 564.507 kb on + strandat 564.507 kb on + strandat 564.507 kb on + strandat 564.513 kb on + strandat 564.515 kb on - strandat 564.515 kb on - strandat 564.515 kb on - strandat 564.535 kb on + strandat 564.538 kb on - strandat 564.538 kb on - strandat 564.538 kb on - strandat 564.543 kb on - strandat 564.543 kb on - strandat 564.550 kb on - strandat 564.571 kb on - strandat 564.571 kb on - strandat 564.589 kb on + strandat 564.601 kb on + strandat 564.607 kb on + strandat 564.622 kb on + strandat 564.656 kb on + strandat 564.656 kb on - strandat 564.660 kb on + strandat 564.675 kb on - strandat 564.716 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 28 days
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562,828 - CCNA_00544 0.21 +0.8
562,844 + CCNA_00544 0.23 +3.3
562,847 - CCNA_00544 0.23 -2.0
562,849 + CCNA_00544 0.23 +0.6
562,849 + CCNA_00544 0.23 +0.9
562,849 + CCNA_00544 0.23 +1.7
562,849 + CCNA_00544 0.23 +1.3
562,849 + CCNA_00544 0.23 +2.5
562,849 + CCNA_00544 0.23 +1.1
562,852 - CCNA_00544 0.23 +0.2
562,857 - CCNA_00544 0.24 +1.1
562,891 + CCNA_00544 0.27 -0.5
562,909 - CCNA_00544 0.28 -1.8
562,926 - CCNA_00544 0.30 -0.3
562,947 + CCNA_00544 0.31 -1.2
562,949 + CCNA_00544 0.31 +1.4
562,949 + CCNA_00544 0.31 +0.4
562,949 + CCNA_00544 0.31 +0.9
562,957 - CCNA_00544 0.32 +0.1
562,957 - CCNA_00544 0.32 +0.4
563,012 - CCNA_00544 0.37 -2.9
563,047 + CCNA_00544 0.40 -1.5
563,055 - CCNA_00544 0.40 +0.5
563,055 - CCNA_00544 0.40 +3.0
563,055 - CCNA_00544 0.40 -1.3
563,056 + CCNA_00544 0.41 +0.0
563,056 + CCNA_00544 0.41 +1.4
563,064 - CCNA_00544 0.41 -1.3
563,078 + CCNA_00544 0.42 +4.6
563,095 + CCNA_00544 0.44 +2.2
563,103 - CCNA_00544 0.45 -1.8
563,173 + CCNA_00544 0.51 +0.5
563,199 + CCNA_00544 0.53 +0.8
563,208 - CCNA_00544 0.53 -1.3
563,221 + CCNA_00544 0.55 +0.7
563,222 - CCNA_00544 0.55 -2.5
563,229 - CCNA_00544 0.55 -0.9
563,257 + CCNA_00544 0.58 +2.0
563,317 + CCNA_00544 0.63 +3.1
563,317 + CCNA_00544 0.63 +1.6
563,325 - CCNA_00544 0.63 +1.5
563,344 + CCNA_00544 0.65 +0.3
563,344 + CCNA_00544 0.65 -0.8
563,344 + CCNA_00544 0.65 -0.5
563,354 + CCNA_00544 0.66 +1.9
563,362 - CCNA_00544 0.67 -1.8
563,391 + CCNA_00544 0.69 +1.4
563,391 + CCNA_00544 0.69 +1.0
563,399 - CCNA_00544 0.70 -2.0
563,399 - CCNA_00544 0.70 +1.3
563,399 - CCNA_00544 0.70 -2.6
563,423 - CCNA_00544 0.72 -0.5
563,494 + CCNA_00544 0.78 +0.3
563,507 + CCNA_00544 0.79 -2.4
563,521 + CCNA_00544 0.80 +0.2
563,521 + CCNA_00544 0.80 -0.4
563,529 - CCNA_00544 0.81 -2.3
563,542 + CCNA_00544 0.82 +0.8
563,545 - CCNA_00544 0.82 +2.3
563,549 - CCNA_00544 0.82 +0.3
563,562 - CCNA_00544 0.84 +1.1
563,574 - CCNA_00544 0.85 -2.8
563,575 - CCNA_00544 0.85 -3.4
563,619 + CCNA_00544 0.88 -0.7
563,638 - -0.6
563,649 + -1.7
563,692 + -1.8
563,714 - +2.3
563,720 + -1.3
563,746 - -0.9
563,748 + +1.8
563,748 + -0.3
563,748 + -0.0
563,748 + +0.4
563,756 - -2.0
563,760 + -1.6
563,760 + -2.3
563,760 + +0.8
563,760 + -2.4
563,768 - -2.5
563,768 - +1.0
563,942 + CCNA_00545 0.16 +1.9
563,942 + CCNA_00545 0.16 +2.6
563,952 + CCNA_00545 0.18 +1.3
563,983 + CCNA_00545 0.22 +0.6
563,983 + +0.5
563,983 - CCNA_00545 0.22 +2.9
564,007 + CCNA_00545 0.25 +1.7
564,015 - CCNA_00545 0.26 +1.9
564,029 + CCNA_00545 0.28 +2.4
564,036 - CCNA_00545 0.29 +1.0
564,095 - +4.3
564,097 + CCNA_00545 0.38 +1.2
564,100 + CCNA_00545 0.38 +1.8
564,108 + CCNA_00545 0.39 +0.2
564,108 + CCNA_00545 0.39 +4.3
564,113 + CCNA_00545 0.40 +3.0
564,116 - CCNA_00545 0.40 +0.7
564,116 - CCNA_00545 0.40 +1.7
564,120 + CCNA_00545 0.41 +1.7
564,120 + CCNA_00545 0.41 +3.6
564,121 + CCNA_00545 0.41 +0.4
564,128 - CCNA_00545 0.42 -0.0
564,149 - CCNA_00545 0.45 +0.5
564,183 - CCNA_00545 0.50 +1.6
564,183 - CCNA_00545 0.50 +0.3
564,212 + CCNA_00545 0.54 +2.9
564,220 - CCNA_00545 0.55 -1.0
564,225 - CCNA_00545 0.55 +3.6
564,225 - CCNA_00545 0.55 +0.8
564,242 + CCNA_00545 0.58 -0.2
564,256 + CCNA_00545 0.60 +3.2
564,276 + CCNA_00545 0.62 +2.9
564,290 + CCNA_00545 0.64 +2.7
564,302 + CCNA_00545 0.66 +3.0
564,303 + CCNA_00545 0.66 +4.0
564,310 - CCNA_00545 0.67 +1.1
564,313 + CCNA_00545 0.67 +2.9
564,320 + CCNA_00545 0.68 +2.1
564,320 + CCNA_00545 0.68 +2.2
564,328 - CCNA_00545 0.70 +0.8
564,344 - CCNA_00545 0.72 +0.0
564,434 + CCNA_00545 0.84 +4.7
564,502 - +1.4
564,502 - -1.7
564,507 + +1.7
564,507 + +4.2
564,507 + +5.0
564,507 + +3.8
564,513 + +3.4
564,515 - +0.7
564,515 - +3.3
564,515 - +1.8
564,535 + +3.6
564,538 - +2.3
564,538 - +1.6
564,538 - +0.8
564,543 - -1.1
564,543 - +2.2
564,550 - +2.0
564,571 - -0.0
564,571 - +0.0
564,589 + +1.1
564,601 + +2.9
564,607 + -0.4
564,622 + -0.1
564,656 + +0.6
564,656 - +1.5
564,660 + +1.1
564,675 - -0.3
564,716 + -0.5

Or see this region's nucleotide sequence