Experiment: PYE_noCalcium 25C survival rep3 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00470 and CCNA_00471 are separated by 26 nucleotides CCNA_00471 and CCNA_00472 overlap by 35 nucleotides CCNA_00472 and CCNA_00473 are separated by 104 nucleotides CCNA_00473 and CCNA_00474 overlap by 1 nucleotides
CCNA_00470: CCNA_00470 - O-antigen polymerase, at 484,789 to 486,132
_00470
CCNA_00471: CCNA_00471 - GDP-L-fucose synthase, at 486,159 to 487,127
_00471
CCNA_00472: CCNA_00472 - GDP-mannose 4,6 dehydratase, at 487,093 to 488,169
_00472
CCNA_00473: CCNA_00473 - hypothetical protein, at 488,274 to 488,768
_00473
CCNA_00474: CCNA_00474 - DNA relaxase/conjugal transfer nickase-helicase trwC, at 488,768 to 491,578
_00474
Position (kb) 487
488
489 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 486.111 kb on + strand at 486.119 kb on - strand at 486.131 kb on + strand at 486.134 kb on - strand at 486.227 kb on + strand at 486.235 kb on - strand at 486.235 kb on - strand at 486.250 kb on - strand at 486.250 kb on - strand at 486.255 kb on + strand at 486.258 kb on - strand, within CCNA_00471 at 486.274 kb on + strand at 486.307 kb on + strand, within CCNA_00471 at 486.315 kb on + strand, within CCNA_00471 at 486.328 kb on - strand, within CCNA_00471 at 486.344 kb on + strand, within CCNA_00471 at 486.345 kb on + strand, within CCNA_00471 at 486.376 kb on + strand, within CCNA_00471 at 486.376 kb on + strand, within CCNA_00471 at 486.376 kb on + strand, within CCNA_00471 at 486.384 kb on - strand, within CCNA_00471 at 486.389 kb on - strand, within CCNA_00471 at 486.402 kb on - strand, within CCNA_00471 at 486.444 kb on + strand, within CCNA_00471 at 486.450 kb on - strand, within CCNA_00471 at 486.555 kb on - strand, within CCNA_00471 at 486.591 kb on + strand, within CCNA_00471 at 486.599 kb on - strand, within CCNA_00471 at 486.609 kb on - strand, within CCNA_00471 at 486.614 kb on - strand, within CCNA_00471 at 486.626 kb on + strand, within CCNA_00471 at 486.626 kb on + strand, within CCNA_00471 at 486.626 kb on - strand, within CCNA_00471 at 486.636 kb on + strand, within CCNA_00471 at 486.637 kb on + strand, within CCNA_00471 at 486.637 kb on + strand, within CCNA_00471 at 486.639 kb on - strand, within CCNA_00471 at 486.644 kb on - strand, within CCNA_00471 at 486.644 kb on - strand, within CCNA_00471 at 486.645 kb on - strand, within CCNA_00471 at 486.645 kb on - strand, within CCNA_00471 at 486.652 kb on + strand, within CCNA_00471 at 486.692 kb on + strand, within CCNA_00471 at 486.693 kb on + strand, within CCNA_00471 at 486.703 kb on + strand, within CCNA_00471 at 486.705 kb on + strand, within CCNA_00471 at 486.721 kb on - strand, within CCNA_00471 at 486.742 kb on + strand, within CCNA_00471 at 486.748 kb on + strand, within CCNA_00471 at 486.748 kb on + strand, within CCNA_00471 at 486.751 kb on - strand, within CCNA_00471 at 486.774 kb on - strand, within CCNA_00471 at 486.779 kb on - strand, within CCNA_00471 at 486.779 kb on - strand, within CCNA_00471 at 486.779 kb on - strand, within CCNA_00471 at 486.795 kb on + strand, within CCNA_00471 at 486.803 kb on - strand, within CCNA_00471 at 486.803 kb on - strand, within CCNA_00471 at 486.885 kb on + strand, within CCNA_00471 at 486.914 kb on - strand, within CCNA_00471 at 486.921 kb on + strand, within CCNA_00471 at 486.930 kb on + strand, within CCNA_00471 at 486.956 kb on - strand, within CCNA_00471 at 486.964 kb on - strand, within CCNA_00471 at 486.969 kb on - strand, within CCNA_00471 at 486.971 kb on - strand, within CCNA_00471 at 486.971 kb on - strand, within CCNA_00471 at 486.971 kb on - strand, within CCNA_00471 at 487.149 kb on + strand at 487.157 kb on - strand at 487.162 kb on - strand at 487.162 kb on - strand at 487.167 kb on - strand at 487.172 kb on - strand at 487.187 kb on - strand at 487.223 kb on - strand, within CCNA_00472 at 487.228 kb on - strand, within CCNA_00472 at 487.238 kb on - strand, within CCNA_00472 at 487.238 kb on - strand, within CCNA_00472 at 487.245 kb on + strand, within CCNA_00472 at 487.250 kb on + strand, within CCNA_00472 at 487.253 kb on - strand, within CCNA_00472 at 487.265 kb on + strand, within CCNA_00472 at 487.270 kb on + strand, within CCNA_00472 at 487.270 kb on + strand, within CCNA_00472 at 487.283 kb on - strand, within CCNA_00472 at 487.303 kb on + strand, within CCNA_00472 at 487.399 kb on + strand, within CCNA_00472 at 487.472 kb on + strand, within CCNA_00472 at 487.487 kb on + strand, within CCNA_00472 at 487.502 kb on + strand, within CCNA_00472 at 487.515 kb on - strand, within CCNA_00472 at 487.582 kb on + strand, within CCNA_00472 at 487.586 kb on + strand, within CCNA_00472 at 487.603 kb on - strand, within CCNA_00472 at 487.626 kb on - strand, within CCNA_00472 at 487.634 kb on - strand, within CCNA_00472 at 487.635 kb on - strand, within CCNA_00472 at 487.635 kb on - strand, within CCNA_00472 at 487.658 kb on - strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.715 kb on - strand, within CCNA_00472 at 487.729 kb on + strand, within CCNA_00472 at 487.739 kb on + strand, within CCNA_00472 at 487.749 kb on + strand, within CCNA_00472 at 487.749 kb on + strand, within CCNA_00472 at 487.799 kb on - strand, within CCNA_00472 at 487.826 kb on - strand, within CCNA_00472 at 487.862 kb on - strand, within CCNA_00472 at 487.874 kb on + strand, within CCNA_00472 at 487.881 kb on - strand, within CCNA_00472 at 487.886 kb on - strand, within CCNA_00472 at 487.888 kb on - strand, within CCNA_00472 at 487.903 kb on - strand, within CCNA_00472 at 487.932 kb on - strand, within CCNA_00472 at 487.942 kb on - strand, within CCNA_00472 at 487.944 kb on + strand, within CCNA_00472 at 487.947 kb on - strand, within CCNA_00472 at 487.952 kb on - strand, within CCNA_00472 at 487.997 kb on - strand, within CCNA_00472 at 487.997 kb on - strand, within CCNA_00472 at 488.041 kb on - strand, within CCNA_00472 at 488.041 kb on - strand, within CCNA_00472 at 488.055 kb on + strand, within CCNA_00472 at 488.055 kb on + strand, within CCNA_00472 at 488.063 kb on - strand at 488.063 kb on - strand at 488.063 kb on - strand at 488.063 kb on - strand at 488.063 kb on - strand at 488.063 kb on - strand at 488.063 kb on - strand at 488.070 kb on - strand at 488.072 kb on + strand at 488.072 kb on + strand at 488.072 kb on + strand at 488.072 kb on + strand at 488.080 kb on - strand at 488.080 kb on - strand at 488.080 kb on - strand at 488.080 kb on - strand at 488.080 kb on - strand at 488.081 kb on + strand at 488.089 kb on - strand at 488.103 kb on + strand at 488.129 kb on + strand at 488.135 kb on - strand at 488.137 kb on - strand at 488.137 kb on - strand at 488.137 kb on - strand at 488.137 kb on - strand at 488.137 kb on - strand at 488.173 kb on - strand at 488.216 kb on + strand at 488.218 kb on + strand at 488.224 kb on - strand at 488.228 kb on + strand at 488.228 kb on + strand at 488.248 kb on + strand at 488.290 kb on + strand at 488.340 kb on + strand, within CCNA_00473 at 488.369 kb on + strand, within CCNA_00473 at 488.401 kb on + strand, within CCNA_00473 at 488.401 kb on + strand, within CCNA_00473 at 488.401 kb on + strand, within CCNA_00473 at 488.409 kb on - strand, within CCNA_00473 at 488.409 kb on - strand, within CCNA_00473 at 488.409 kb on - strand, within CCNA_00473 at 488.443 kb on + strand, within CCNA_00473 at 488.468 kb on + strand, within CCNA_00473 at 488.479 kb on + strand, within CCNA_00473 at 488.487 kb on + strand, within CCNA_00473 at 488.495 kb on - strand, within CCNA_00473 at 488.502 kb on - strand, within CCNA_00473 at 488.504 kb on + strand, within CCNA_00473 at 488.519 kb on + strand, within CCNA_00473 at 488.524 kb on + strand, within CCNA_00473 at 488.527 kb on + strand, within CCNA_00473 at 488.527 kb on - strand, within CCNA_00473 at 488.532 kb on + strand, within CCNA_00473 at 488.532 kb on - strand, within CCNA_00473 at 488.546 kb on - strand, within CCNA_00473 at 488.568 kb on + strand, within CCNA_00473 at 488.594 kb on - strand, within CCNA_00473 at 488.604 kb on + strand, within CCNA_00473 at 488.609 kb on - strand, within CCNA_00473 at 488.609 kb on - strand, within CCNA_00473 at 488.612 kb on - strand, within CCNA_00473 at 488.617 kb on - strand, within CCNA_00473 at 488.617 kb on - strand, within CCNA_00473 at 488.660 kb on - strand, within CCNA_00473 at 488.706 kb on - strand, within CCNA_00473 at 488.706 kb on - strand, within CCNA_00473 at 488.768 kb on + strand at 488.768 kb on + strand at 488.768 kb on + strand at 488.768 kb on + strand at 488.768 kb on + strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.783 kb on - strand at 488.826 kb on + strand at 488.826 kb on + strand at 488.840 kb on + strand at 488.877 kb on - strand at 488.877 kb on - strand at 488.879 kb on + strand at 488.939 kb on - strand at 488.950 kb on + strand at 488.950 kb on + strand at 488.950 kb on + strand at 488.950 kb on + strand at 488.950 kb on + strand at 488.950 kb on + strand at 488.958 kb on - strand at 488.980 kb on + strand at 488.999 kb on + strand at 489.007 kb on - strand at 489.007 kb on - strand at 489.025 kb on - strand at 489.025 kb on - strand at 489.026 kb on - strand at 489.047 kb on + strand at 489.047 kb on + strand at 489.064 kb on + strand, within CCNA_00474 at 489.064 kb on + strand, within CCNA_00474 at 489.064 kb on + strand, within CCNA_00474 at 489.066 kb on - strand, within CCNA_00474 at 489.077 kb on + strand, within CCNA_00474 at 489.091 kb on - strand, within CCNA_00474 at 489.097 kb on - strand, within CCNA_00474 at 489.098 kb on + strand, within CCNA_00474 at 489.098 kb on + strand, within CCNA_00474 at 489.098 kb on + strand, within CCNA_00474 at 489.098 kb on + strand, within CCNA_00474 at 489.135 kb on + strand, within CCNA_00474 at 489.150 kb on + strand, within CCNA_00474 at 489.151 kb on - strand, within CCNA_00474
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 28 days remove 486,111 + -0.4 486,119 - -1.5 486,131 + -2.2 486,134 - -0.0 486,227 + +4.2 486,235 - +1.6 486,235 - +3.9 486,250 - +3.1 486,250 - +3.4 486,255 + +3.3 486,258 - CCNA_00471 0.10 +3.5 486,274 + +2.7 486,307 + CCNA_00471 0.15 +1.6 486,315 + CCNA_00471 0.16 +0.9 486,328 - CCNA_00471 0.17 +3.2 486,344 + CCNA_00471 0.19 +0.8 486,345 + CCNA_00471 0.19 +3.0 486,376 + CCNA_00471 0.22 +2.3 486,376 + CCNA_00471 0.22 +2.2 486,376 + CCNA_00471 0.22 +0.6 486,384 - CCNA_00471 0.23 +1.9 486,389 - CCNA_00471 0.24 +3.7 486,402 - CCNA_00471 0.25 +3.0 486,444 + CCNA_00471 0.29 +2.8 486,450 - CCNA_00471 0.30 +3.6 486,555 - CCNA_00471 0.41 +3.7 486,591 + CCNA_00471 0.45 +2.0 486,599 - CCNA_00471 0.45 +3.9 486,609 - CCNA_00471 0.46 +3.3 486,614 - CCNA_00471 0.47 +4.1 486,626 + CCNA_00471 0.48 +3.3 486,626 + CCNA_00471 0.48 +1.0 486,626 - CCNA_00471 0.48 +4.2 486,636 + CCNA_00471 0.49 -0.1 486,637 + CCNA_00471 0.49 +2.0 486,637 + CCNA_00471 0.49 +2.2 486,639 - CCNA_00471 0.50 +3.9 486,644 - CCNA_00471 0.50 +3.0 486,644 - CCNA_00471 0.50 +1.8 486,645 - CCNA_00471 0.50 +4.4 486,645 - CCNA_00471 0.50 +4.0 486,652 + CCNA_00471 0.51 +1.9 486,692 + CCNA_00471 0.55 +1.8 486,693 + CCNA_00471 0.55 +1.6 486,703 + CCNA_00471 0.56 +2.3 486,705 + CCNA_00471 0.56 +2.6 486,721 - CCNA_00471 0.58 +3.4 486,742 + CCNA_00471 0.60 +2.6 486,748 + CCNA_00471 0.61 +2.5 486,748 + CCNA_00471 0.61 +2.4 486,751 - CCNA_00471 0.61 +2.9 486,774 - CCNA_00471 0.63 +2.8 486,779 - CCNA_00471 0.64 +3.9 486,779 - CCNA_00471 0.64 +4.4 486,779 - CCNA_00471 0.64 +3.0 486,795 + CCNA_00471 0.66 +2.2 486,803 - CCNA_00471 0.66 +3.6 486,803 - CCNA_00471 0.66 +3.9 486,885 + CCNA_00471 0.75 +1.5 486,914 - CCNA_00471 0.78 +3.6 486,921 + CCNA_00471 0.79 +3.4 486,930 + CCNA_00471 0.80 +1.6 486,956 - CCNA_00471 0.82 +3.0 486,964 - CCNA_00471 0.83 +1.7 486,969 - CCNA_00471 0.84 +2.0 486,971 - CCNA_00471 0.84 +3.6 486,971 - CCNA_00471 0.84 +3.2 486,971 - CCNA_00471 0.84 +3.6 487,149 + +2.2 487,157 - +0.9 487,162 - +4.2 487,162 - +1.3 487,167 - +0.3 487,172 - +0.4 487,187 - +1.4 487,223 - CCNA_00472 0.12 +2.5 487,228 - CCNA_00472 0.13 +0.3 487,238 - CCNA_00472 0.13 +3.1 487,238 - CCNA_00472 0.13 +2.0 487,245 + CCNA_00472 0.14 +1.7 487,250 + CCNA_00472 0.15 +1.2 487,253 - CCNA_00472 0.15 +3.2 487,265 + CCNA_00472 0.16 -1.1 487,270 + CCNA_00472 0.16 +0.9 487,270 + CCNA_00472 0.16 +0.3 487,283 - CCNA_00472 0.18 +2.7 487,303 + CCNA_00472 0.19 -2.7 487,399 + CCNA_00472 0.28 -2.6 487,472 + CCNA_00472 0.35 +0.6 487,487 + CCNA_00472 0.37 +0.2 487,502 + CCNA_00472 0.38 +2.0 487,515 - CCNA_00472 0.39 +2.9 487,582 + CCNA_00472 0.45 +1.2 487,586 + CCNA_00472 0.46 +3.0 487,603 - CCNA_00472 0.47 +2.4 487,626 - CCNA_00472 0.49 +2.3 487,634 - CCNA_00472 0.50 +1.6 487,635 - CCNA_00472 0.50 +2.6 487,635 - CCNA_00472 0.50 +1.3 487,658 - CCNA_00472 0.52 -1.4 487,664 + CCNA_00472 0.53 -1.9 487,664 + CCNA_00472 0.53 +4.2 487,664 + CCNA_00472 0.53 +1.8 487,664 + CCNA_00472 0.53 +2.1 487,664 + CCNA_00472 0.53 +2.8 487,672 - CCNA_00472 0.54 +2.1 487,672 - CCNA_00472 0.54 +3.0 487,672 - CCNA_00472 0.54 +2.0 487,672 - CCNA_00472 0.54 +2.2 487,715 - CCNA_00472 0.58 +2.6 487,729 + CCNA_00472 0.59 -0.6 487,739 + CCNA_00472 0.60 +3.0 487,749 + CCNA_00472 0.61 +0.6 487,749 + CCNA_00472 0.61 +1.6 487,799 - CCNA_00472 0.66 +2.9 487,826 - CCNA_00472 0.68 +3.6 487,862 - CCNA_00472 0.71 +0.8 487,874 + CCNA_00472 0.73 +2.2 487,881 - CCNA_00472 0.73 +1.7 487,886 - CCNA_00472 0.74 +2.1 487,888 - CCNA_00472 0.74 +2.3 487,903 - CCNA_00472 0.75 +1.2 487,932 - CCNA_00472 0.78 +1.8 487,942 - CCNA_00472 0.79 +2.3 487,944 + CCNA_00472 0.79 +0.1 487,947 - CCNA_00472 0.79 +1.6 487,952 - CCNA_00472 0.80 -0.7 487,997 - CCNA_00472 0.84 +1.3 487,997 - CCNA_00472 0.84 +1.5 488,041 - CCNA_00472 0.88 +2.7 488,041 - CCNA_00472 0.88 +1.9 488,055 + CCNA_00472 0.89 +2.8 488,055 + CCNA_00472 0.89 +2.2 488,063 - +2.2 488,063 - +1.8 488,063 - +1.9 488,063 - +1.3 488,063 - -0.8 488,063 - +4.1 488,063 - +2.1 488,070 - +2.0 488,072 + -1.5 488,072 + +0.6 488,072 + +0.6 488,072 + +0.6 488,080 - +1.5 488,080 - +2.0 488,080 - +2.0 488,080 - +2.5 488,080 - +2.5 488,081 + +0.6 488,089 - +4.0 488,103 + -1.2 488,129 + -1.5 488,135 - -0.0 488,137 - +1.8 488,137 - +1.3 488,137 - +4.6 488,137 - +2.3 488,137 - +1.8 488,173 - -1.6 488,216 + -2.8 488,218 + +1.2 488,224 - +0.1 488,228 + +1.2 488,228 + -1.6 488,248 + -1.4 488,290 + -2.0 488,340 + CCNA_00473 0.13 -1.9 488,369 + CCNA_00473 0.19 +0.2 488,401 + CCNA_00473 0.26 -1.5 488,401 + CCNA_00473 0.26 +1.5 488,401 + CCNA_00473 0.26 -1.4 488,409 - CCNA_00473 0.27 -3.1 488,409 - CCNA_00473 0.27 -1.5 488,409 - CCNA_00473 0.27 -0.1 488,443 + CCNA_00473 0.34 -0.8 488,468 + CCNA_00473 0.39 -0.7 488,479 + CCNA_00473 0.41 +0.4 488,487 + CCNA_00473 0.43 -0.6 488,495 - CCNA_00473 0.45 -1.4 488,502 - CCNA_00473 0.46 -0.4 488,504 + CCNA_00473 0.46 +0.8 488,519 + CCNA_00473 0.49 -0.1 488,524 + CCNA_00473 0.51 -2.4 488,527 + CCNA_00473 0.51 -0.8 488,527 - CCNA_00473 0.51 -2.2 488,532 + CCNA_00473 0.52 +0.6 488,532 - CCNA_00473 0.52 -1.9 488,546 - CCNA_00473 0.55 -0.9 488,568 + CCNA_00473 0.59 -1.4 488,594 - CCNA_00473 0.65 -0.6 488,604 + CCNA_00473 0.67 +0.7 488,609 - CCNA_00473 0.68 +0.1 488,609 - CCNA_00473 0.68 -0.9 488,612 - CCNA_00473 0.68 +2.2 488,617 - CCNA_00473 0.69 -1.6 488,617 - CCNA_00473 0.69 -0.1 488,660 - CCNA_00473 0.78 -1.4 488,706 - CCNA_00473 0.87 -2.8 488,706 - CCNA_00473 0.87 -0.2 488,768 + +0.5 488,768 + -1.6 488,768 + -1.3 488,768 + -0.7 488,768 + -1.9 488,776 - -0.2 488,776 - -2.8 488,776 - +1.2 488,776 - -0.1 488,776 - +0.5 488,776 - +0.2 488,776 - -2.8 488,776 - -0.2 488,776 - -1.4 488,776 - +2.2 488,783 - -4.1 488,826 + -2.1 488,826 + +0.0 488,840 + +0.2 488,877 - -1.4 488,877 - -0.8 488,879 + -1.8 488,939 - -1.1 488,950 + -1.8 488,950 + -1.1 488,950 + -1.1 488,950 + -0.0 488,950 + -2.4 488,950 + -0.4 488,958 - +0.6 488,980 + -0.1 488,999 + -1.8 489,007 - -1.4 489,007 - -2.4 489,025 - -2.4 489,025 - +0.9 489,026 - +0.2 489,047 + -1.4 489,047 + -1.9 489,064 + CCNA_00474 0.11 +3.0 489,064 + CCNA_00474 0.11 +0.5 489,064 + CCNA_00474 0.11 -1.4 489,066 - CCNA_00474 0.11 +1.4 489,077 + CCNA_00474 0.11 +0.3 489,091 - CCNA_00474 0.11 +0.1 489,097 - CCNA_00474 0.12 +1.0 489,098 + CCNA_00474 0.12 -2.6 489,098 + CCNA_00474 0.12 -0.9 489,098 + CCNA_00474 0.12 -2.9 489,098 + CCNA_00474 0.12 +1.5 489,135 + CCNA_00474 0.13 -1.6 489,150 + CCNA_00474 0.14 -0.4 489,151 - CCNA_00474 0.14 -2.0
Or see this region's nucleotide sequence