Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00085

Experiment: PYE_noCalcium 25C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00084 and CCNA_00085 are separated by 12 nucleotidesCCNA_00085 and CCNA_00086 are separated by 53 nucleotides CCNA_00084: CCNA_00084 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 89,053 to 90,642 _00084 CCNA_00085: CCNA_00085 - dienelactone hydrolase-related protein, at 90,655 to 91,413 _00085 CCNA_00086: CCNA_00086 - NAD-specific glutamate dehydrogenase GdhZ, at 91,467 to 96,290 _00086 Position (kb) 90 91 92Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 89.666 kb on + strand, within CCNA_00084at 89.666 kb on + strand, within CCNA_00084at 89.674 kb on - strand, within CCNA_00084at 89.712 kb on + strand, within CCNA_00084at 89.712 kb on + strand, within CCNA_00084at 89.720 kb on - strand, within CCNA_00084at 89.757 kb on + strand, within CCNA_00084at 89.757 kb on + strand, within CCNA_00084at 89.757 kb on + strand, within CCNA_00084at 89.757 kb on + strand, within CCNA_00084at 89.757 kb on + strand, within CCNA_00084at 89.758 kb on + strand, within CCNA_00084at 89.765 kb on - strand, within CCNA_00084at 89.765 kb on - strand, within CCNA_00084at 89.765 kb on - strand, within CCNA_00084at 89.766 kb on - strand, within CCNA_00084at 89.766 kb on - strand, within CCNA_00084at 89.790 kb on + strand, within CCNA_00084at 89.797 kb on + strand, within CCNA_00084at 89.819 kb on - strand, within CCNA_00084at 89.824 kb on + strand, within CCNA_00084at 89.891 kb on + strand, within CCNA_00084at 89.916 kb on + strand, within CCNA_00084at 89.941 kb on + strand, within CCNA_00084at 89.942 kb on + strand, within CCNA_00084at 89.942 kb on + strand, within CCNA_00084at 89.947 kb on + strand, within CCNA_00084at 89.952 kb on + strand, within CCNA_00084at 89.959 kb on + strand, within CCNA_00084at 89.959 kb on + strand, within CCNA_00084at 89.971 kb on + strand, within CCNA_00084at 90.028 kb on - strand, within CCNA_00084at 90.040 kb on - strand, within CCNA_00084at 90.063 kb on - strand, within CCNA_00084at 90.112 kb on + strand, within CCNA_00084at 90.184 kb on + strand, within CCNA_00084at 90.184 kb on + strand, within CCNA_00084at 90.186 kb on - strand, within CCNA_00084at 90.194 kb on - strand, within CCNA_00084at 90.194 kb on - strand, within CCNA_00084at 90.237 kb on + strand, within CCNA_00084at 90.237 kb on + strand, within CCNA_00084at 90.237 kb on + strand, within CCNA_00084at 90.237 kb on + strand, within CCNA_00084at 90.245 kb on - strand, within CCNA_00084at 90.245 kb on - strand, within CCNA_00084at 90.245 kb on - strand, within CCNA_00084at 90.292 kb on - strand, within CCNA_00084at 90.292 kb on - strandat 90.311 kb on + strand, within CCNA_00084at 90.330 kb on + strand, within CCNA_00084at 90.336 kb on + strand, within CCNA_00084at 90.357 kb on - strand, within CCNA_00084at 90.364 kb on + strand, within CCNA_00084at 90.372 kb on - strand, within CCNA_00084at 90.372 kb on - strand, within CCNA_00084at 90.405 kb on + strand, within CCNA_00084at 90.425 kb on - strand, within CCNA_00084at 90.453 kb on + strand, within CCNA_00084at 90.482 kb on + strand, within CCNA_00084at 90.507 kb on + strandat 90.566 kb on + strandat 90.574 kb on - strandat 90.583 kb on - strandat 90.618 kb on - strandat 90.647 kb on + strandat 90.647 kb on + strandat 90.655 kb on - strandat 90.655 kb on - strandat 90.708 kb on + strandat 90.708 kb on + strandat 90.708 kb on + strandat 90.708 kb on + strandat 90.708 kb on + strandat 90.708 kb on + strandat 90.716 kb on - strandat 90.716 kb on - strandat 90.716 kb on - strandat 90.742 kb on + strand, within CCNA_00085at 90.751 kb on - strand, within CCNA_00085at 90.805 kb on + strand, within CCNA_00085at 90.909 kb on + strand, within CCNA_00085at 90.922 kb on + strandat 90.927 kb on + strand, within CCNA_00085at 90.937 kb on + strand, within CCNA_00085at 90.960 kb on + strand, within CCNA_00085at 90.960 kb on + strand, within CCNA_00085at 90.963 kb on - strand, within CCNA_00085at 90.980 kb on - strand, within CCNA_00085at 91.002 kb on - strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.026 kb on - strand, within CCNA_00085at 91.026 kb on - strand, within CCNA_00085at 91.026 kb on - strand, within CCNA_00085at 91.026 kb on - strand, within CCNA_00085at 91.026 kb on - strand, within CCNA_00085at 91.034 kb on - strand, within CCNA_00085at 91.036 kb on - strand, within CCNA_00085at 91.039 kb on + strand, within CCNA_00085at 91.039 kb on + strand, within CCNA_00085at 91.047 kb on - strand, within CCNA_00085at 91.063 kb on + strand, within CCNA_00085at 91.063 kb on + strand, within CCNA_00085at 91.068 kb on + strand, within CCNA_00085at 91.073 kb on + strand, within CCNA_00085at 91.076 kb on - strand, within CCNA_00085at 91.086 kb on - strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.109 kb on - strand, within CCNA_00085at 91.109 kb on - strand, within CCNA_00085at 91.119 kb on + strand, within CCNA_00085at 91.119 kb on + strand, within CCNA_00085at 91.122 kb on - strand, within CCNA_00085at 91.128 kb on - strand, within CCNA_00085at 91.163 kb on + strand, within CCNA_00085at 91.168 kb on + strand, within CCNA_00085at 91.168 kb on + strand, within CCNA_00085at 91.168 kb on + strand, within CCNA_00085at 91.176 kb on - strand, within CCNA_00085at 91.176 kb on - strand, within CCNA_00085at 91.178 kb on + strand, within CCNA_00085at 91.216 kb on - strand, within CCNA_00085at 91.217 kb on - strand, within CCNA_00085at 91.223 kb on + strand, within CCNA_00085at 91.223 kb on + strand, within CCNA_00085at 91.231 kb on - strand, within CCNA_00085at 91.231 kb on - strand, within CCNA_00085at 91.231 kb on - strand, within CCNA_00085at 91.277 kb on - strand, within CCNA_00085at 91.334 kb on + strand, within CCNA_00085at 91.342 kb on - strandat 91.352 kb on + strandat 91.370 kb on - strandat 91.380 kb on - strandat 91.380 kb on - strandat 91.380 kb on - strandat 91.380 kb on - strandat 91.408 kb on + strandat 91.454 kb on + strandat 91.462 kb on - strandat 91.462 kb on - strandat 91.464 kb on + strandat 91.472 kb on - strandat 91.472 kb on - strandat 91.474 kb on + strandat 91.506 kb on - strandat 91.673 kb on - strandat 91.860 kb on - strandat 92.004 kb on - strand, within CCNA_00086

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 28 days
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89,666 + CCNA_00084 0.39 -3.4
89,666 + CCNA_00084 0.39 -2.1
89,674 - CCNA_00084 0.39 +0.4
89,712 + CCNA_00084 0.41 -2.8
89,712 + CCNA_00084 0.41 -4.2
89,720 - CCNA_00084 0.42 -1.9
89,757 + CCNA_00084 0.44 -1.7
89,757 + CCNA_00084 0.44 -2.6
89,757 + CCNA_00084 0.44 -0.6
89,757 + CCNA_00084 0.44 -3.6
89,757 + CCNA_00084 0.44 -2.6
89,758 + CCNA_00084 0.44 -1.7
89,765 - CCNA_00084 0.45 -1.2
89,765 - CCNA_00084 0.45 -2.8
89,765 - CCNA_00084 0.45 +0.6
89,766 - CCNA_00084 0.45 -3.4
89,766 - CCNA_00084 0.45 -1.2
89,790 + CCNA_00084 0.46 -0.7
89,797 + CCNA_00084 0.47 -1.0
89,819 - CCNA_00084 0.48 -0.2
89,824 + CCNA_00084 0.48 -3.4
89,891 + CCNA_00084 0.53 -4.6
89,916 + CCNA_00084 0.54 -1.9
89,941 + CCNA_00084 0.56 -1.6
89,942 + CCNA_00084 0.56 -3.6
89,942 + CCNA_00084 0.56 -2.2
89,947 + CCNA_00084 0.56 -3.2
89,952 + CCNA_00084 0.57 -2.9
89,959 + CCNA_00084 0.57 -3.2
89,959 + CCNA_00084 0.57 -2.6
89,971 + CCNA_00084 0.58 -0.7
90,028 - CCNA_00084 0.61 -2.2
90,040 - CCNA_00084 0.62 -3.0
90,063 - CCNA_00084 0.64 -1.4
90,112 + CCNA_00084 0.67 -2.0
90,184 + CCNA_00084 0.71 -1.2
90,184 + CCNA_00084 0.71 -2.8
90,186 - CCNA_00084 0.71 -2.1
90,194 - CCNA_00084 0.72 -2.9
90,194 - CCNA_00084 0.72 -3.6
90,237 + CCNA_00084 0.74 -0.4
90,237 + CCNA_00084 0.74 -1.0
90,237 + CCNA_00084 0.74 -2.2
90,237 + CCNA_00084 0.74 -2.4
90,245 - CCNA_00084 0.75 -0.7
90,245 - CCNA_00084 0.75 -1.2
90,245 - CCNA_00084 0.75 -3.2
90,292 - CCNA_00084 0.78 -2.2
90,292 - -0.4
90,311 + CCNA_00084 0.79 -3.3
90,330 + CCNA_00084 0.80 -1.9
90,336 + CCNA_00084 0.81 -3.1
90,357 - CCNA_00084 0.82 -4.5
90,364 + CCNA_00084 0.82 -2.6
90,372 - CCNA_00084 0.83 +0.7
90,372 - CCNA_00084 0.83 -0.9
90,405 + CCNA_00084 0.85 -2.2
90,425 - CCNA_00084 0.86 -3.3
90,453 + CCNA_00084 0.88 -2.1
90,482 + CCNA_00084 0.90 -1.4
90,507 + -0.6
90,566 + -3.6
90,574 - -1.6
90,583 - -0.4
90,618 - -3.5
90,647 + +0.3
90,647 + +0.8
90,655 - -2.9
90,655 - +0.9
90,708 + -0.2
90,708 + +0.7
90,708 + -0.3
90,708 + +1.5
90,708 + +1.6
90,708 + +1.6
90,716 - +0.1
90,716 - -0.9
90,716 - -2.4
90,742 + CCNA_00085 0.11 +1.5
90,751 - CCNA_00085 0.13 +1.2
90,805 + CCNA_00085 0.20 +1.3
90,909 + CCNA_00085 0.33 +2.5
90,922 + +0.6
90,927 + CCNA_00085 0.36 +1.5
90,937 + CCNA_00085 0.37 +1.4
90,960 + CCNA_00085 0.40 +0.9
90,960 + CCNA_00085 0.40 +2.1
90,963 - CCNA_00085 0.41 +0.8
90,980 - CCNA_00085 0.43 +0.0
91,002 - CCNA_00085 0.46 +2.2
91,018 + CCNA_00085 0.48 +1.9
91,018 + CCNA_00085 0.48 +1.0
91,018 + CCNA_00085 0.48 +1.5
91,018 + CCNA_00085 0.48 +2.3
91,018 + CCNA_00085 0.48 +1.7
91,018 + CCNA_00085 0.48 +1.6
91,018 + CCNA_00085 0.48 +2.5
91,026 - CCNA_00085 0.49 +0.4
91,026 - CCNA_00085 0.49 +0.3
91,026 - CCNA_00085 0.49 -0.0
91,026 - CCNA_00085 0.49 -0.5
91,026 - CCNA_00085 0.49 +0.8
91,034 - CCNA_00085 0.50 +0.4
91,036 - CCNA_00085 0.50 -0.3
91,039 + CCNA_00085 0.51 +2.2
91,039 + CCNA_00085 0.51 +0.7
91,047 - CCNA_00085 0.52 +0.5
91,063 + CCNA_00085 0.54 +0.4
91,063 + CCNA_00085 0.54 +2.4
91,068 + CCNA_00085 0.54 +2.3
91,073 + CCNA_00085 0.55 +2.5
91,076 - CCNA_00085 0.55 +1.3
91,086 - CCNA_00085 0.57 +1.6
91,101 + CCNA_00085 0.59 +1.8
91,101 + CCNA_00085 0.59 +1.0
91,101 + CCNA_00085 0.59 +1.4
91,101 + CCNA_00085 0.59 +0.3
91,101 + CCNA_00085 0.59 +0.8
91,101 + CCNA_00085 0.59 +0.9
91,109 - CCNA_00085 0.60 +2.8
91,109 - CCNA_00085 0.60 +0.6
91,119 + CCNA_00085 0.61 +0.3
91,119 + CCNA_00085 0.61 +0.9
91,122 - CCNA_00085 0.62 +1.7
91,128 - CCNA_00085 0.62 +0.4
91,163 + CCNA_00085 0.67 +1.6
91,168 + CCNA_00085 0.68 +1.1
91,168 + CCNA_00085 0.68 +0.4
91,168 + CCNA_00085 0.68 +0.6
91,176 - CCNA_00085 0.69 +2.1
91,176 - CCNA_00085 0.69 +0.8
91,178 + CCNA_00085 0.69 +1.6
91,216 - CCNA_00085 0.74 -0.9
91,217 - CCNA_00085 0.74 +1.8
91,223 + CCNA_00085 0.75 +0.6
91,223 + CCNA_00085 0.75 +1.3
91,231 - CCNA_00085 0.76 +0.6
91,231 - CCNA_00085 0.76 +1.9
91,231 - CCNA_00085 0.76 -1.7
91,277 - CCNA_00085 0.82 +0.8
91,334 + CCNA_00085 0.89 +1.0
91,342 - +1.2
91,352 + +2.1
91,370 - +1.3
91,380 - +2.1
91,380 - +1.3
91,380 - +1.3
91,380 - +1.8
91,408 + +0.0
91,454 + +0.1
91,462 - -1.0
91,462 - +0.3
91,464 + +0.7
91,472 - +0.7
91,472 - -0.3
91,474 + -0.2
91,506 - -0.9
91,673 - +2.1
91,860 - -0.9
92,004 - CCNA_00086 0.11 -1.9

Or see this region's nucleotide sequence