Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0357 and tRNA-Thr are separated by 75 nucleotides tRNA-Thr and DVU0358 are separated by 214 nucleotides DVU0358 and DVU0359 are separated by 282 nucleotides
DVU0357: DVU0357 - conserved hypothetical protein (TIGR), at 406,059 to 406,976
DVU0357
DVU_tRNA-Thr-1: tRNA-Thr - tRNA with anticodon GGT for Thr (VIMSS-AUTO), at 407,052 to 407,127
tRNA-Thr
DVU0358: DVU0358 - hypothetical protein (TIGR), at 407,342 to 408,085
DVU0358
DVU0359: DVU0359 - HesB-like domain (TIGR), at 408,368 to 408,694
DVU0359
Position (kb) 407
408
409 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 406.350 kb on - strand, within DVU0357 at 406.367 kb on + strand, within DVU0357 at 406.431 kb on + strand, within DVU0357 at 406.432 kb on - strand, within DVU0357 at 406.441 kb on + strand, within DVU0357 at 406.561 kb on + strand, within DVU0357 at 406.561 kb on + strand, within DVU0357 at 406.562 kb on + strand, within DVU0357 at 406.569 kb on - strand, within DVU0357 at 406.577 kb on - strand, within DVU0357 at 406.691 kb on - strand, within DVU0357 at 406.742 kb on + strand, within DVU0357 at 406.794 kb on + strand, within DVU0357 at 406.799 kb on + strand, within DVU0357 at 406.799 kb on + strand, within DVU0357 at 406.805 kb on - strand, within DVU0357 at 406.823 kb on + strand, within DVU0357 at 406.876 kb on + strand, within DVU0357 at 406.973 kb on + strand at 407.088 kb on - strand, within tRNA-Thr at 407.101 kb on + strand, within tRNA-Thr at 407.124 kb on - strand at 407.221 kb on + strand at 407.319 kb on + strand at 407.502 kb on - strand, within DVU0358 at 407.595 kb on - strand, within DVU0358 at 407.595 kb on - strand, within DVU0358 at 407.711 kb on - strand, within DVU0358 at 407.758 kb on - strand, within DVU0358 at 407.881 kb on + strand, within DVU0358 at 407.889 kb on - strand, within DVU0358 at 407.923 kb on - strand, within DVU0358 at 407.928 kb on - strand, within DVU0358 at 407.933 kb on - strand, within DVU0358 at 407.985 kb on + strand, within DVU0358 at 407.998 kb on - strand, within DVU0358 at 408.109 kb on + strand at 408.116 kb on + strand at 408.124 kb on - strand at 408.142 kb on - strand at 408.165 kb on - strand at 408.313 kb on + strand at 408.379 kb on - strand at 408.482 kb on + strand, within DVU0359 at 408.514 kb on + strand, within DVU0359 at 408.551 kb on + strand, within DVU0359 at 408.628 kb on - strand, within DVU0359 at 408.846 kb on - strand at 408.934 kb on + strand at 408.942 kb on - strand at 408.975 kb on + strand at 409.019 kb on - strand at 409.021 kb on + strand at 409.022 kb on + strand at 409.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM remove 406,350 - DVU0357 0.32 +0.2 406,367 + DVU0357 0.34 +0.5 406,431 + DVU0357 0.41 -1.4 406,432 - DVU0357 0.41 -0.3 406,441 + DVU0357 0.42 +0.1 406,561 + DVU0357 0.55 +0.5 406,561 + DVU0357 0.55 +0.3 406,562 + DVU0357 0.55 -0.4 406,569 - DVU0357 0.56 -4.6 406,577 - DVU0357 0.56 -0.3 406,691 - DVU0357 0.69 +0.1 406,742 + DVU0357 0.74 -0.3 406,794 + DVU0357 0.80 +0.2 406,799 + DVU0357 0.81 -0.1 406,799 + DVU0357 0.81 +1.6 406,805 - DVU0357 0.81 +0.2 406,823 + DVU0357 0.83 -0.2 406,876 + DVU0357 0.89 -5.0 406,973 + -0.7 407,088 - tRNA-Thr DVU_tRNA-Thr-1 0.47 -2.4 407,101 + tRNA-Thr DVU_tRNA-Thr-1 0.64 -0.8 407,124 - +1.5 407,221 + +0.6 407,319 + +3.0 407,502 - DVU0358 0.22 -1.9 407,595 - DVU0358 0.34 +0.6 407,595 - DVU0358 0.34 -1.2 407,711 - DVU0358 0.50 +0.2 407,758 - DVU0358 0.56 -1.5 407,881 + DVU0358 0.72 +1.0 407,889 - DVU0358 0.74 +1.2 407,923 - DVU0358 0.78 -0.7 407,928 - DVU0358 0.79 +0.1 407,933 - DVU0358 0.79 -1.1 407,985 + DVU0358 0.86 +1.7 407,998 - DVU0358 0.88 +0.5 408,109 + +0.1 408,116 + +0.4 408,124 - +0.1 408,142 - +0.2 408,165 - +2.0 408,313 + -0.7 408,379 - -0.5 408,482 + DVU0359 0.35 -1.0 408,514 + DVU0359 0.45 +0.2 408,551 + DVU0359 0.56 +1.5 408,628 - DVU0359 0.80 -0.2 408,846 - +0.2 408,934 + +0.4 408,942 - +0.5 408,975 + -0.2 409,019 - -0.5 409,021 + +0.8 409,022 + +0.1 409,071 + +0.2
Or see this region's nucleotide sequence