Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4820

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4818 and Psyr_4819 are separated by 32 nucleotidesPsyr_4819 and Psyr_4820 overlap by 4 nucleotidesPsyr_4820 and Psyr_4821 are separated by 282 nucleotides Psyr_4818: Psyr_4818 - chorismate mutase, at 5,715,688 to 5,716,245 _4818 Psyr_4819: Psyr_4819 - conserved hypothetical protein, at 5,716,278 to 5,716,859 _4819 Psyr_4820: Psyr_4820 - conserved hypothetical protein, at 5,716,856 to 5,717,488 _4820 Psyr_4821: Psyr_4821 - PAS/PAC sensor signal transduction histidine kinase, at 5,717,771 to 5,718,856 _4821 Position (kb) 5716 5717 5718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5715.976 kb on - strand, within Psyr_4818at 5716.284 kb on + strandat 5716.284 kb on + strandat 5716.284 kb on + strandat 5716.284 kb on + strandat 5716.284 kb on + strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.389 kb on + strand, within Psyr_4819at 5716.389 kb on + strand, within Psyr_4819at 5716.389 kb on + strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.566 kb on + strand, within Psyr_4819at 5716.705 kb on - strand, within Psyr_4819at 5716.831 kb on + strandat 5716.831 kb on + strandat 5716.840 kb on + strandat 5716.841 kb on - strandat 5716.931 kb on + strand, within Psyr_4820at 5716.932 kb on - strand, within Psyr_4820at 5716.932 kb on - strand, within Psyr_4820at 5716.932 kb on - strand, within Psyr_4820at 5716.932 kb on - strand, within Psyr_4820at 5716.932 kb on - strand, within Psyr_4820at 5716.932 kb on - strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5717.076 kb on + strand, within Psyr_4820at 5717.076 kb on + strand, within Psyr_4820at 5717.077 kb on - strand, within Psyr_4820at 5717.132 kb on - strand, within Psyr_4820at 5717.417 kb on + strand, within Psyr_4820at 5717.418 kb on - strand, within Psyr_4820at 5717.418 kb on - strand, within Psyr_4820at 5717.418 kb on - strand, within Psyr_4820at 5717.544 kb on + strandat 5717.544 kb on + strandat 5717.587 kb on - strandat 5717.587 kb on - strandat 5717.626 kb on + strandat 5717.627 kb on - strandat 5717.686 kb on - strandat 5717.686 kb on - strandat 5717.858 kb on + strandat 5717.858 kb on + strandat 5717.858 kb on + strandat 5717.858 kb on + strandat 5717.858 kb on + strandat 5717.858 kb on + strandat 5717.859 kb on - strandat 5717.859 kb on - strandat 5717.859 kb on - strandat 5717.859 kb on - strandat 5717.859 kb on - strandat 5717.995 kb on + strand, within Psyr_4821at 5717.995 kb on + strand, within Psyr_4821at 5718.065 kb on - strand, within Psyr_4821at 5718.071 kb on - strand, within Psyr_4821at 5718.278 kb on + strand, within Psyr_4821at 5718.279 kb on - strand, within Psyr_4821at 5718.279 kb on - strand, within Psyr_4821at 5718.317 kb on - strand, within Psyr_4821at 5718.433 kb on + strand, within Psyr_4821at 5718.433 kb on + strand, within Psyr_4821at 5718.433 kb on + strand, within Psyr_4821at 5718.433 kb on + strand, within Psyr_4821at 5718.434 kb on - strand, within Psyr_4821at 5718.449 kb on + strand, within Psyr_4821at 5718.450 kb on - strand, within Psyr_4821

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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5,715,976 - Psyr_4818 0.52 +1.0
5,716,284 + -0.3
5,716,284 + -0.3
5,716,284 + -1.1
5,716,284 + +1.1
5,716,284 + -1.3
5,716,285 - -0.7
5,716,285 - -1.7
5,716,285 - -2.0
5,716,285 - -0.9
5,716,285 - +0.3
5,716,285 - -0.2
5,716,285 - +0.3
5,716,285 - +1.6
5,716,285 - +1.8
5,716,285 - -0.1
5,716,285 - +0.9
5,716,383 + Psyr_4819 0.18 +0.5
5,716,383 + Psyr_4819 0.18 +1.0
5,716,383 + Psyr_4819 0.18 +0.5
5,716,383 + Psyr_4819 0.18 -0.1
5,716,383 + Psyr_4819 0.18 -0.8
5,716,383 + Psyr_4819 0.18 +0.9
5,716,383 + Psyr_4819 0.18 +0.3
5,716,383 + Psyr_4819 0.18 +0.4
5,716,383 + Psyr_4819 0.18 +0.6
5,716,383 + Psyr_4819 0.18 -1.0
5,716,384 - Psyr_4819 0.18 +1.0
5,716,384 - Psyr_4819 0.18 -0.4
5,716,384 - Psyr_4819 0.18 -0.2
5,716,384 - Psyr_4819 0.18 -3.3
5,716,384 - Psyr_4819 0.18 +0.5
5,716,384 - Psyr_4819 0.18 -0.4
5,716,384 - Psyr_4819 0.18 -0.6
5,716,384 - Psyr_4819 0.18 -0.9
5,716,384 - Psyr_4819 0.18 +0.7
5,716,384 - Psyr_4819 0.18 +0.6
5,716,384 - Psyr_4819 0.18 -0.9
5,716,384 - Psyr_4819 0.18 +0.3
5,716,384 - Psyr_4819 0.18 -1.5
5,716,384 - Psyr_4819 0.18 +0.4
5,716,384 - Psyr_4819 0.18 -0.6
5,716,384 - Psyr_4819 0.18 -0.9
5,716,385 + Psyr_4819 0.18 +0.5
5,716,385 + Psyr_4819 0.18 +0.2
5,716,385 + Psyr_4819 0.18 +0.7
5,716,385 + Psyr_4819 0.18 -0.7
5,716,385 + Psyr_4819 0.18 +0.5
5,716,386 - Psyr_4819 0.19 +0.8
5,716,386 - Psyr_4819 0.19 +0.1
5,716,386 - Psyr_4819 0.19 +0.8
5,716,386 - Psyr_4819 0.19 -0.2
5,716,386 - Psyr_4819 0.19 -0.0
5,716,386 - Psyr_4819 0.19 +0.4
5,716,389 + Psyr_4819 0.19 -0.2
5,716,389 + Psyr_4819 0.19 -0.7
5,716,389 + Psyr_4819 0.19 +0.0
5,716,390 - Psyr_4819 0.19 +0.3
5,716,390 - Psyr_4819 0.19 -1.9
5,716,566 + Psyr_4819 0.49 +0.3
5,716,705 - Psyr_4819 0.73 -0.3
5,716,831 + -0.2
5,716,831 + +0.8
5,716,840 + +0.2
5,716,841 - -0.3
5,716,931 + Psyr_4820 0.12 +0.8
5,716,932 - Psyr_4820 0.12 +0.5
5,716,932 - Psyr_4820 0.12 -1.0
5,716,932 - Psyr_4820 0.12 -0.3
5,716,932 - Psyr_4820 0.12 -1.0
5,716,932 - Psyr_4820 0.12 +0.1
5,716,932 - Psyr_4820 0.12 +0.8
5,716,937 + Psyr_4820 0.13 -0.7
5,716,937 + Psyr_4820 0.13 -0.5
5,716,937 + Psyr_4820 0.13 +1.5
5,716,937 + Psyr_4820 0.13 -2.1
5,716,937 + Psyr_4820 0.13 +0.7
5,716,937 + Psyr_4820 0.13 -0.7
5,716,937 + Psyr_4820 0.13 -1.1
5,716,937 + Psyr_4820 0.13 +0.6
5,716,937 + Psyr_4820 0.13 +0.3
5,716,937 + Psyr_4820 0.13 +0.3
5,716,937 + Psyr_4820 0.13 -0.9
5,716,937 + Psyr_4820 0.13 -0.7
5,716,937 + Psyr_4820 0.13 -0.8
5,716,937 + Psyr_4820 0.13 -1.6
5,716,937 + Psyr_4820 0.13 -1.4
5,716,937 + Psyr_4820 0.13 -1.8
5,716,938 - Psyr_4820 0.13 +0.6
5,716,938 - Psyr_4820 0.13 -1.3
5,716,938 - Psyr_4820 0.13 -0.1
5,716,938 - Psyr_4820 0.13 +0.7
5,716,938 - Psyr_4820 0.13 -1.0
5,716,938 - Psyr_4820 0.13 -1.1
5,716,938 - Psyr_4820 0.13 -0.5
5,716,938 - Psyr_4820 0.13 -0.6
5,716,938 - Psyr_4820 0.13 -1.7
5,716,938 - Psyr_4820 0.13 -1.0
5,716,938 - Psyr_4820 0.13 -0.3
5,716,938 - Psyr_4820 0.13 -1.2
5,716,938 - Psyr_4820 0.13 +0.7
5,716,938 - Psyr_4820 0.13 -2.3
5,716,938 - Psyr_4820 0.13 -2.1
5,716,938 - Psyr_4820 0.13 -1.0
5,716,938 - Psyr_4820 0.13 -1.3
5,716,938 - Psyr_4820 0.13 -0.4
5,716,938 - Psyr_4820 0.13 +2.3
5,716,938 - Psyr_4820 0.13 -0.9
5,717,076 + Psyr_4820 0.35 -1.5
5,717,076 + Psyr_4820 0.35 -0.4
5,717,077 - Psyr_4820 0.35 -0.9
5,717,132 - Psyr_4820 0.44 +2.1
5,717,417 + Psyr_4820 0.89 -1.5
5,717,418 - Psyr_4820 0.89 -0.4
5,717,418 - Psyr_4820 0.89 -1.9
5,717,418 - Psyr_4820 0.89 -1.7
5,717,544 + -1.6
5,717,544 + +0.8
5,717,587 - +0.5
5,717,587 - +0.6
5,717,626 + +0.4
5,717,627 - -1.0
5,717,686 - -2.9
5,717,686 - +1.0
5,717,858 + +0.7
5,717,858 + +0.1
5,717,858 + +0.5
5,717,858 + +0.5
5,717,858 + +0.7
5,717,858 + +0.2
5,717,859 - -0.0
5,717,859 - +0.9
5,717,859 - -0.7
5,717,859 - +0.1
5,717,859 - +1.5
5,717,995 + Psyr_4821 0.21 -1.1
5,717,995 + Psyr_4821 0.21 +0.4
5,718,065 - Psyr_4821 0.27 +2.1
5,718,071 - Psyr_4821 0.28 +1.1
5,718,278 + Psyr_4821 0.47 +0.5
5,718,279 - Psyr_4821 0.47 -0.9
5,718,279 - Psyr_4821 0.47 +0.6
5,718,317 - Psyr_4821 0.50 -0.6
5,718,433 + Psyr_4821 0.61 -0.2
5,718,433 + Psyr_4821 0.61 +0.6
5,718,433 + Psyr_4821 0.61 +0.3
5,718,433 + Psyr_4821 0.61 -0.1
5,718,434 - Psyr_4821 0.61 +1.0
5,718,449 + Psyr_4821 0.62 +0.2
5,718,450 - Psyr_4821 0.63 -0.8

Or see this region's nucleotide sequence