Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3858

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,597,427	+				-1.8
4,597,720	-				+0.3
4,597,764	-				+0.2
4,597,770	+				-0.8
4,597,770	+				+0.2
4,597,770	+				-1.0
4,597,770	+				+0.1
4,597,770	+				-0.0
4,597,771	-				-0.1
4,597,771	-				-0.4
4,597,772	+				+0.9
4,597,772	+				-1.3
4,597,772	+				+0.2
4,597,772	+				-1.4
4,597,772	+				-1.7
4,597,772	+				+0.9
4,597,772	+				-0.0
4,597,772	+				+0.2
4,597,772	+				+3.3
4,597,773	-				-0.7
4,597,773	-				-1.4
4,597,773	-				+1.3
4,597,773	-				-1.9
4,597,773	-				+1.0
4,597,773	-				-1.0
4,597,773	-				+0.9
4,597,773	-				-0.1
4,597,773	-				+1.1
4,597,773	-				-0.9
4,597,773	-				+0.7
4,597,773	-				+0.3
4,597,773	-				-0.1
4,597,773	-				+0.1
4,597,773	-				-0.3
4,597,773	-				-1.1
4,597,773	-				+0.4
4,597,773	-				-1.5
4,597,773	-				-0.1
4,597,773	-				-0.7
4,597,773	-				+0.3
4,597,773	-				+1.1
4,598,001	+		Psyr_3857	0.54	+0.4
4,598,001	+		Psyr_3857	0.54	+0.5
4,598,001	+		Psyr_3857	0.54	-0.3
4,598,002	-		Psyr_3857	0.54	+0.7
4,598,025	+		Psyr_3857	0.59	+0.2
4,598,026	-		Psyr_3857	0.60	-1.3
4,598,026	-		Psyr_3857	0.60	-1.9
4,598,216	+				+0.2
4,598,305	-				+0.7
4,598,564	+		Psyr_3858	0.18	-1.6
4,598,565	-		Psyr_3858	0.18	-2.6
4,598,565	-		Psyr_3858	0.18	+1.9
4,598,575	-		Psyr_3858	0.19	-0.7
4,598,658	+		Psyr_3858	0.28	-1.1
4,598,658	+		Psyr_3858	0.28	-2.1
4,598,658	+		Psyr_3858	0.28	+1.2
4,598,658	+		Psyr_3858	0.28	+2.2
4,598,659	-		Psyr_3858	0.28	-0.1
4,598,659	-		Psyr_3858	0.28	-0.7
4,598,659	-		Psyr_3858	0.28	+0.0
4,598,668	-		Psyr_3858	0.29	+0.9
4,598,673	+		Psyr_3858	0.29	-1.4
4,598,673	+		Psyr_3858	0.29	+0.2
4,598,673	+		Psyr_3858	0.29	-0.1
4,598,673	+		Psyr_3858	0.29	-1.7
4,598,673	+		Psyr_3858	0.29	+1.7
4,598,673	+		Psyr_3858	0.29	-0.2
4,598,674	-		Psyr_3858	0.29	+2.0
4,598,674	-		Psyr_3858	0.29	-0.1
4,598,704	-		Psyr_3858	0.32	+0.1
4,598,704	-		Psyr_3858	0.32	+0.8
4,598,704	-		Psyr_3858	0.32	-1.0
4,598,704	-		Psyr_3858	0.32	-1.6
4,598,709	+		Psyr_3858	0.33	+1.2
4,598,710	-		Psyr_3858	0.33	-2.2
4,598,710	-		Psyr_3858	0.33	-2.4
4,598,710	-		Psyr_3858	0.33	-0.1
4,598,817	+		Psyr_3858	0.44	+1.6
4,598,862	+		Psyr_3858	0.49	-1.0
4,598,862	+		Psyr_3858	0.49	-0.6
4,598,862	+		Psyr_3858	0.49	-0.7
4,598,862	+		Psyr_3858	0.49	+0.8
4,598,863	-		Psyr_3858	0.49	-0.7
4,598,883	+		Psyr_3858	0.51	-0.2
4,598,883	+		Psyr_3858	0.51	-0.4
4,598,883	+		Psyr_3858	0.51	+0.8
4,598,883	+		Psyr_3858	0.51	+1.2
4,598,883	+		Psyr_3858	0.51	+1.0
4,598,883	+		Psyr_3858	0.51	+0.6
4,598,883	+		Psyr_3858	0.51	+0.6
4,598,883	+		Psyr_3858	0.51	+0.9
4,598,883	+		Psyr_3858	0.51	-1.6
4,598,883	+		Psyr_3858	0.51	-1.0
4,598,884	-		Psyr_3858	0.51	-1.2
4,598,884	-		Psyr_3858	0.51	+0.9
4,598,884	-		Psyr_3858	0.51	+0.2
4,598,925	+		Psyr_3858	0.55	+0.2
4,598,985	+		Psyr_3858	0.62	+0.7
4,598,994	+		Psyr_3858	0.62	-1.9
4,599,009	+		Psyr_3858	0.64	-1.6
4,599,010	-		Psyr_3858	0.64	-1.0
4,599,027	+		Psyr_3858	0.66	+1.9
4,599,027	+		Psyr_3858	0.66	+1.3
4,599,060	+		Psyr_3858	0.69	-1.1
4,599,060	+		Psyr_3858	0.69	+1.9
4,599,060	+		Psyr_3858	0.69	-0.2
4,599,060	+		Psyr_3858	0.69	+2.3
4,599,060	+		Psyr_3858	0.69	+0.5
4,599,060	+		Psyr_3858	0.69	+0.5
4,599,061	-		Psyr_3858	0.69	+0.6
4,599,061	-		Psyr_3858	0.69	+1.2
4,599,061	-		Psyr_3858	0.69	-2.4
4,599,061	-		Psyr_3858	0.69	+1.7
4,599,061	-		Psyr_3858	0.69	+0.1
4,599,105	+		Psyr_3858	0.74	-0.6
4,599,105	+		Psyr_3858	0.74	+1.2
4,599,105	+		Psyr_3858	0.74	-1.4
4,599,106	-		Psyr_3858	0.74	+0.1
4,599,106	-		Psyr_3858	0.74	+2.2
4,599,106	-		Psyr_3858	0.74	-0.8
4,599,198	+		Psyr_3858	0.84	+0.7
4,599,198	+		Psyr_3858	0.84	-0.8
4,599,198	+		Psyr_3858	0.84	-2.2
4,599,199	-		Psyr_3858	0.84	+0.9
4,599,237	+		Psyr_3858	0.88	+0.3
4,599,237	+		Psyr_3858	0.88	+0.8
4,599,324	+				-0.5
4,599,324	+				-0.0
4,599,325	-				-2.7
4,599,325	-				-1.1
4,599,328	-				-1.4
4,599,358	+				+0.3
4,599,358	+				+1.0
4,599,359	-				+0.2
4,599,361	+				+2.4
4,599,362	-				+1.4
4,599,362	-				-1.1
4,599,698	+		Psyr_3859	0.31	-2.7
4,599,698	+		Psyr_3859	0.31	-1.4
4,599,698	+		Psyr_3859	0.31	+1.1
4,599,698	+		Psyr_3859	0.31	+1.2
4,599,698	+		Psyr_3859	0.31	-1.0
4,599,698	+		Psyr_3859	0.31	+0.3
4,599,699	-		Psyr_3859	0.31	-1.1
4,599,699	-		Psyr_3859	0.31	+1.9
4,599,699	-		Psyr_3859	0.31	-1.1
4,599,699	-		Psyr_3859	0.31	-0.8
4,599,770	+		Psyr_3859	0.38	-0.6
4,599,888	-		Psyr_3859	0.49	+1.2
4,599,999	-		Psyr_3859	0.60	-2.7
4,599,999	-		Psyr_3859	0.60	-0.5
4,599,999	-		Psyr_3859	0.60	-1.2
4,599,999	-		Psyr_3859	0.60	+0.4
4,599,999	-		Psyr_3859	0.60	+0.0
4,600,061	-		Psyr_3859	0.66	-0.4
4,600,136	+		Psyr_3859	0.73	+1.2
4,600,136	+		Psyr_3859	0.73	+0.7
4,600,136	+		Psyr_3859	0.73	+0.4
4,600,137	-		Psyr_3859	0.73	-0.6
4,600,137	-		Psyr_3859	0.73	-0.6
4,600,137	-		Psyr_3859	0.73	+0.1
4,600,137	-		Psyr_3859	0.73	+1.1
4,600,137	-		Psyr_3859	0.73	+0.2
4,600,159	+		Psyr_3859	0.75	+0.0
4,600,159	+		Psyr_3859	0.75	-1.3
4,600,159	+		Psyr_3859	0.75	+0.5
4,600,159	+		Psyr_3859	0.75	-0.9
4,600,159	+		Psyr_3859	0.75	-0.1
4,600,160	-		Psyr_3859	0.76	-1.4
4,600,160	-		Psyr_3859	0.76	+0.6
4,600,169	+		Psyr_3859	0.76	+3.1
4,600,169	+		Psyr_3859	0.76	+1.1
4,600,169	+		Psyr_3859	0.76	+0.5
4,600,169	+		Psyr_3859	0.76	-0.7
4,600,169	+		Psyr_3859	0.76	+1.9
4,600,296	-		Psyr_3859	0.89	+0.5