Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3843

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,579,670	-		Psyr_3842	0.84	-0.7
4,579,670	-		Psyr_3842	0.84	+1.8
4,579,715	-		Psyr_3842	0.86	-0.4
4,580,316	-				-1.2
4,580,450	+				+2.5
4,580,560	+				+0.8
4,580,560	+				-1.4
4,580,573	+				+0.5
4,580,573	+				+0.2
4,580,574	-				-1.4
4,580,574	-				+0.0
4,580,574	-				+0.3
4,580,574	-				-0.4
4,580,584	+				-0.1
4,580,584	+				-1.1
4,580,584	+				+0.9
4,580,584	+				-0.5
4,580,584	+				+0.6
4,580,584	+				+0.3
4,580,584	+				+0.3
4,580,584	+				-1.2
4,580,585	-				+0.5
4,580,585	-				-0.3
4,580,585	-				+0.9
4,580,585	-				-0.4
4,580,585	-				+0.4
4,580,585	-				+0.4
4,580,585	-				-1.7
4,580,585	-				-0.3
4,580,586	+				-0.3
4,580,586	+				-0.2
4,580,586	+				+0.4
4,580,586	+				-1.1
4,580,587	-				+0.7
4,580,587	-				+0.4
4,580,595	+				-1.5
4,580,595	+				-0.9
4,580,595	+				+1.1
4,580,595	+				-0.4
4,580,595	+				-0.6
4,580,596	-				-0.9
4,580,596	-				+0.3
4,580,596	-				-0.9
4,580,638	-				-0.0
4,580,647	+				-0.4
4,580,647	+				+0.5
4,580,648	-				+0.3
4,580,670	+				+0.7
4,580,670	+				+1.0
4,580,670	+				+1.7
4,580,671	-				-2.4
4,580,700	+				-1.3
4,580,700	+				+1.3
4,580,700	+				-2.1
4,580,700	+				-0.5
4,580,700	+				-0.1
4,580,701	-				-0.9
4,580,701	-				-1.1
4,580,713	+				-0.4
4,580,714	-				+0.1
4,580,714	-				-0.3
4,580,782	+				+0.1
4,580,890	+		Psyr_3843	0.11	+0.1
4,580,890	+		Psyr_3843	0.11	-0.2
4,580,890	+		Psyr_3843	0.11	-1.2
4,580,891	-		Psyr_3843	0.11	-0.7
4,580,891	-		Psyr_3843	0.11	+0.5
4,580,891	-		Psyr_3843	0.11	-0.1
4,580,961	+		Psyr_3843	0.14	+0.3
4,580,962	-		Psyr_3843	0.14	-0.9
4,580,962	-		Psyr_3843	0.14	-0.4
4,580,962	-		Psyr_3843	0.14	-0.5
4,581,071	+		Psyr_3843	0.18	+0.3
4,581,110	+		Psyr_3843	0.20	-1.5
4,581,110	+		Psyr_3843	0.20	-1.2
4,581,110	+		Psyr_3843	0.20	+0.0
4,581,110	+		Psyr_3843	0.20	-1.6
4,581,111	-		Psyr_3843	0.20	-3.3
4,581,111	-		Psyr_3843	0.20	+1.0
4,581,111	-		Psyr_3843	0.20	-0.3
4,581,113	+		Psyr_3843	0.20	-0.1
4,581,113	+		Psyr_3843	0.20	-0.1
4,581,113	+		Psyr_3843	0.20	-1.0
4,581,113	+		Psyr_3843	0.20	-1.5
4,581,114	-		Psyr_3843	0.20	-0.4
4,581,114	-		Psyr_3843	0.20	-0.8
4,581,201	-		Psyr_3843	0.24	+0.2
4,581,201	-		Psyr_3843	0.24	-1.1
4,581,521	+		Psyr_3843	0.38	-0.8
4,581,522	-		Psyr_3843	0.38	-0.8
4,581,596	+		Psyr_3843	0.41	+1.0
4,581,596	+		Psyr_3843	0.41	-0.4
4,581,596	+		Psyr_3843	0.41	-0.3
4,581,596	+		Psyr_3843	0.41	+1.6
4,581,596	+		Psyr_3843	0.41	-3.2
4,581,596	+		Psyr_3843	0.41	-1.4
4,581,596	+		Psyr_3843	0.41	+1.6
4,581,597	-		Psyr_3843	0.41	+2.1
4,581,597	-		Psyr_3843	0.41	+1.4
4,581,597	-		Psyr_3843	0.41	+2.6
4,581,597	-		Psyr_3843	0.41	+0.5
4,581,597	-		Psyr_3843	0.41	-3.5
4,581,597	-		Psyr_3843	0.41	-0.7
4,581,597	-		Psyr_3843	0.41	+0.1
4,581,597	-		Psyr_3843	0.41	+1.1
4,581,597	-		Psyr_3843	0.41	-0.4
4,581,597	-		Psyr_3843	0.41	+0.2
4,581,597	-		Psyr_3843	0.41	-1.3
4,581,597	-		Psyr_3843	0.41	+1.2
4,581,791	+		Psyr_3843	0.50	-1.1
4,581,956	+		Psyr_3843	0.57	-0.7
4,582,088	+		Psyr_3843	0.63	-1.0
4,582,088	+		Psyr_3843	0.63	-1.8
4,582,088	+		Psyr_3843	0.63	-1.8
4,582,088	+		Psyr_3843	0.63	-0.4
4,582,088	+		Psyr_3843	0.63	-1.4
4,582,089	-		Psyr_3843	0.63	-1.7
4,582,089	-		Psyr_3843	0.63	-2.8
4,582,089	-		Psyr_3843	0.63	-0.7
4,582,089	-		Psyr_3843	0.63	+1.9
4,582,091	+		Psyr_3843	0.63	+0.1
4,582,092	-		Psyr_3843	0.63	-0.8
4,582,092	-		Psyr_3843	0.63	+0.3
4,582,092	-		Psyr_3843	0.63	+1.0
4,582,234	+		Psyr_3843	0.69	-0.9
4,582,532	+		Psyr_3843	0.82	-0.2
4,582,724	+				-0.1
4,582,725	-				-0.3
4,582,725	-				-0.6
4,582,725	-				+0.8
4,582,728	+				-1.2
4,582,728	+				-0.1
4,582,729	-				-1.0
4,582,729	-				+0.8
4,582,736	+				+0.1
4,582,736	+				-1.7
4,582,736	+				+0.2
4,582,736	+				-0.5
4,582,736	+				+1.6
4,582,736	+				-0.5
4,582,736	+				+0.2
4,582,736	+				-0.0
4,582,736	+				-1.1
4,582,736	+				+0.9
4,582,737	-				-0.2
4,582,737	-				+1.4
4,582,737	-				+0.8
4,582,737	-				-1.1
4,582,737	-				-1.2
4,582,737	-				+0.2
4,582,737	-				-0.1
4,582,737	-				-3.5
4,582,737	-				-2.0
4,582,737	-				+0.4
4,582,738	+				+0.6
4,582,738	+				+1.1
4,582,738	+				+1.1
4,582,738	+				+0.6
4,582,738	+				-1.7
4,582,738	+				-0.7
4,582,738	+				-0.1
4,582,738	+				+0.3
4,582,738	+				+0.3
4,582,738	+				-1.1
4,582,739	-				-0.7
4,582,739	-				-0.1
4,582,739	-				+1.7
4,582,739	-				+1.5
4,582,739	-				-0.3
4,582,739	-				+0.6
4,582,739	-				-0.7
4,582,739	-				-0.7
4,582,739	-				-0.5
4,582,739	-				+0.3
4,583,039	+				+1.5
4,583,133	-		Psyr_3844	0.14	-1.9
4,583,135	+		Psyr_3844	0.15	-0.2
4,583,135	+		Psyr_3844	0.15	+1.5
4,583,135	+		Psyr_3844	0.15	-1.4
4,583,136	-		Psyr_3844	0.15	-0.3
4,583,136	-		Psyr_3844	0.15	+1.1
4,583,371	-				+0.5
4,583,371	-				+1.2
4,583,380	+				+0.2
4,583,380	+				+0.7
4,583,380	+				-0.1
4,583,381	-				+1.3
4,583,429	-				-0.4
4,583,489	+				-0.2
4,583,490	-				-0.4
4,583,628	+				+0.4
4,583,690	+				-2.4
4,583,690	+				+1.3
4,583,691	-				-0.1
4,583,691	-				-0.1
4,583,692	+				-1.7
4,583,692	+				-2.2
4,583,693	-				-0.1
4,583,700	-				-1.3
4,583,700	-				-0.3
4,583,738	+				-0.2
4,583,739	-				-1.0
4,583,917	+		Psyr_3845	0.17	+3.2
4,583,917	+		Psyr_3845	0.17	+0.5
4,583,917	+		Psyr_3845	0.17	+0.1
4,583,917	+		Psyr_3845	0.17	+1.1
4,583,918	-		Psyr_3845	0.18	+2.1
4,583,918	-		Psyr_3845	0.18	+1.0
4,583,918	-		Psyr_3845	0.18	-1.2