Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3734

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,442,489	+		Psyr_3733	0.73	-0.6
4,442,489	+		Psyr_3733	0.73	+0.5
4,442,489	+		Psyr_3733	0.73	+0.3
4,442,552	+		Psyr_3733	0.75	-1.9
4,442,741	+		Psyr_3733	0.81	-0.9
4,442,741	+		Psyr_3733	0.81	-0.1
4,442,741	+		Psyr_3733	0.81	-1.6
4,442,822	+		Psyr_3733	0.84	+0.1
4,442,822	+		Psyr_3733	0.84	+1.2
4,442,823	-		Psyr_3733	0.84	+0.5
4,442,966	+		Psyr_3733	0.88	-2.3
4,442,966	+		Psyr_3733	0.88	-2.0
4,442,978	+		Psyr_3733	0.89	+0.9
4,443,010	+		Psyr_3733	0.90	-2.7
4,443,011	-		Psyr_3733	0.90	+0.2
4,443,047	+				+0.2
4,443,093	-				+1.2
4,443,104	+				-1.1
4,443,104	+				+0.2
4,443,105	-				-1.7
4,443,105	-				-1.5
4,443,200	+				+0.0
4,443,200	+				-1.8
4,443,200	+				+0.9
4,443,200	+				-1.7
4,443,200	+				-0.3
4,443,200	+				+0.9
4,443,200	+				+0.2
4,443,201	-				-0.1
4,443,201	-				+0.4
4,443,201	-				-1.5
4,443,236	+				-0.8
4,443,349	+				+1.1
4,443,349	+				+0.8
4,443,350	-				-2.3
4,443,350	-				+0.5
4,443,409	+				-0.1
4,443,409	+				+1.8
4,443,409	+				+0.5
4,443,410	-				-1.0
4,443,419	+				+0.3
4,443,426	+				+1.5
4,443,426	+				-0.4
4,443,426	+				-0.9
4,443,426	+				-0.3
4,443,427	-				-0.8
4,443,427	-				+0.1
4,443,439	+				+0.1
4,443,439	+				-1.9
4,443,440	-				+0.6
4,443,440	-				+0.0
4,443,492	+				-0.9
4,443,820	-		Psyr_3734	0.13	-1.8
4,443,820	-		Psyr_3734	0.13	+1.3
4,443,820	-		Psyr_3734	0.13	+0.2
4,444,030	-		Psyr_3734	0.20	-0.7
4,444,044	+		Psyr_3734	0.21	-1.3
4,444,044	+		Psyr_3734	0.21	+1.1
4,444,045	-		Psyr_3734	0.21	+0.5
4,444,186	-		Psyr_3734	0.25	-2.4
4,444,585	-		Psyr_3734	0.39	+1.9
4,444,644	+		Psyr_3734	0.41	+1.3
4,444,658	+		Psyr_3734	0.41	-2.3
4,444,794	+		Psyr_3734	0.46	+1.2
4,444,794	+		Psyr_3734	0.46	+1.0
4,444,794	+		Psyr_3734	0.46	-0.8
4,444,795	-		Psyr_3734	0.46	+2.2
4,444,795	-		Psyr_3734	0.46	+1.6
4,444,817	+		Psyr_3734	0.46	+0.0
4,444,817	+		Psyr_3734	0.46	+1.3
4,444,818	-				+2.5
4,444,818	-		Psyr_3734	0.46	+2.5
4,444,818	-		Psyr_3734	0.46	-1.2
4,444,818	-		Psyr_3734	0.46	+1.2
4,444,818	-		Psyr_3734	0.46	-1.2
4,444,840	+		Psyr_3734	0.47	+0.5
4,444,840	+		Psyr_3734	0.47	-3.1
4,445,001	+		Psyr_3734	0.52	-0.4
4,445,002	-		Psyr_3734	0.52	+0.6
4,445,107	-		Psyr_3734	0.56	-0.9
4,445,239	+		Psyr_3734	0.60	-0.9
4,445,240	-		Psyr_3734	0.60	-0.8
4,445,240	-		Psyr_3734	0.60	+0.4
4,445,240	-		Psyr_3734	0.60	-0.2
4,445,240	-		Psyr_3734	0.60	-1.0
4,445,242	+		Psyr_3734	0.60	+1.7
4,445,437	-		Psyr_3734	0.67	+0.7
4,445,437	-		Psyr_3734	0.67	-2.6
4,445,571	+		Psyr_3734	0.71	+0.5
4,445,571	+		Psyr_3734	0.71	-0.8
4,445,571	+		Psyr_3734	0.71	-0.4
4,445,572	-		Psyr_3734	0.71	-0.1
4,445,572	-		Psyr_3734	0.71	-2.6
4,445,572	-		Psyr_3734	0.71	+0.4
4,445,595	+		Psyr_3734	0.72	+2.6
4,445,596	-		Psyr_3734	0.72	+0.3
4,445,596	-		Psyr_3734	0.72	+0.5
4,445,781	+		Psyr_3734	0.78	-1.1
4,445,782	-		Psyr_3734	0.78	-2.3
4,445,794	-		Psyr_3734	0.79	+1.5
4,445,823	+		Psyr_3734	0.80	-1.4
4,445,823	+		Psyr_3734	0.80	-1.1
4,445,823	+		Psyr_3734	0.80	-0.3
4,445,823	+		Psyr_3734	0.80	-0.4
4,445,824	-		Psyr_3734	0.80	+0.4
4,445,824	-		Psyr_3734	0.80	+0.5
4,445,824	-		Psyr_3734	0.80	-0.1
4,445,824	-		Psyr_3734	0.80	+0.6
4,445,910	+		Psyr_3734	0.83	+1.5
4,445,970	+		Psyr_3734	0.85	-0.3
4,445,970	+		Psyr_3734	0.85	+0.9
4,445,970	+		Psyr_3734	0.85	+1.2
4,445,970	+		Psyr_3734	0.85	-0.3
4,445,971	-		Psyr_3734	0.85	-2.4
4,445,971	-		Psyr_3734	0.85	+1.1
4,445,971	-		Psyr_3734	0.85	+0.4
4,445,971	-		Psyr_3734	0.85	-1.6
4,445,971	-		Psyr_3734	0.85	-0.6
4,445,971	-		Psyr_3734	0.85	+0.4
4,445,971	-		Psyr_3734	0.85	-1.5
4,445,972	+		Psyr_3734	0.85	+0.3
4,445,972	+		Psyr_3734	0.85	+0.5
4,445,972	+		Psyr_3734	0.85	+0.2
4,445,972	+		Psyr_3734	0.85	+0.2
4,445,972	+		Psyr_3734	0.85	+1.2
4,445,972	+		Psyr_3734	0.85	+0.2
4,445,972	+		Psyr_3734	0.85	-0.4
4,445,972	+		Psyr_3734	0.85	-0.2
4,445,986	-		Psyr_3734	0.85	+0.4
4,446,108	+		Psyr_3734	0.89	+0.3
4,446,108	+		Psyr_3734	0.89	+0.6
4,446,108	+		Psyr_3734	0.89	-0.0
4,446,108	+		Psyr_3734	0.89	-1.0
4,446,108	+		Psyr_3734	0.89	-0.3
4,446,108	+		Psyr_3734	0.89	+0.9
4,446,108	+		Psyr_3734	0.89	+1.8
4,446,109	-		Psyr_3734	0.89	+0.5
4,446,109	-		Psyr_3734	0.89	-1.4
4,446,109	-		Psyr_3734	0.89	-0.9
4,446,109	-		Psyr_3734	0.89	+0.6
4,446,109	-		Psyr_3734	0.89	+0.1
4,446,321	+				-1.1
4,446,322	-				-3.0
4,446,322	-				-1.1
4,446,322	-				-2.5
4,446,331	-				-1.7
4,446,349	+				-0.7
4,446,350	-				-1.1
4,446,350	-				-0.5
4,446,397	-				+0.8
4,446,446	-				+1.3
4,446,480	+				-1.4
4,446,481	-				+1.4
4,446,481	-				-0.6
4,446,564	+				-1.6
4,446,565	-				+0.7
4,446,566	+				+0.2
4,446,566	+				+0.5
4,446,567	-				+0.1
4,446,700	+				+1.1
4,446,700	+				-1.9
4,446,749	+				-0.5
4,446,750	-				+0.5
4,446,753	+				+0.3
4,446,753	+				-1.1
4,446,830	+				+0.1
4,446,907	+				+1.3
4,446,907	+				-0.1
4,446,907	+				-1.1
4,446,907	+				+0.1
4,446,907	+				+0.7
4,446,908	-				-0.8
4,446,908	-				-0.1
4,446,908	-				-0.4
4,446,908	-				-2.7
4,446,908	-				-0.6
4,446,908	-				+1.3
4,447,377	+		Psyr_3735	0.25	-0.7
4,447,377	+		Psyr_3735	0.25	-0.7