Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3381

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,038,873	+		Psyr_3379	0.54	-1.2
4,038,907	+		Psyr_3379	0.70	-1.2
4,038,907	+		Psyr_3379	0.70	-0.8
4,038,907	+		Psyr_3379	0.70	-0.5
4,038,907	+		Psyr_3379	0.70	-1.0
4,038,907	+		Psyr_3379	0.70	-2.4
4,038,907	+		Psyr_3379	0.70	+0.1
4,038,907	+		Psyr_3379	0.70	-0.7
4,038,908	-		Psyr_3379	0.71	+0.2
4,038,908	-		Psyr_3379	0.71	-0.4
4,038,908	-		Psyr_3379	0.71	+1.3
4,038,913	+		Psyr_3379	0.73	-0.2
4,038,913	+		Psyr_3379	0.73	+0.3
4,038,913	+		Psyr_3379	0.73	-1.3
4,038,913	+		Psyr_3379	0.73	+1.0
4,038,913	+		Psyr_3379	0.73	-3.2
4,038,913	+		Psyr_3379	0.73	-1.2
4,038,914	-		Psyr_3379	0.74	-1.1
4,038,914	-		Psyr_3379	0.74	+0.4
4,038,915	+		Psyr_3379	0.74	-0.8
4,038,915	+		Psyr_3379	0.74	-0.0
4,038,916	-		Psyr_3379	0.75	+0.6
4,038,916	-		Psyr_3379	0.75	+1.1
4,038,916	-		Psyr_3379	0.75	-1.0
4,038,916	-		Psyr_3379	0.75	-1.6
4,038,946	+		Psyr_3379	0.89	+0.8
4,038,946	+		Psyr_3379	0.89	+0.4
4,038,947	-		Psyr_3379	0.90	+1.7
4,038,947	-		Psyr_3379	0.90	+0.6
4,038,947	-		Psyr_3379	0.90	+0.5
4,038,947	-		Psyr_3379	0.90	+1.0
4,039,039	-				-2.0
4,039,039	-				-0.7
4,039,055	+		Psyr_3380	0.10	+0.5
4,039,055	+		Psyr_3380	0.10	-1.2
4,039,055	+		Psyr_3380	0.10	-0.1
4,039,055	+		Psyr_3380	0.10	-2.6
4,039,055	+		Psyr_3380	0.10	+0.4
4,039,055	+		Psyr_3380	0.10	-2.6
4,039,055	+		Psyr_3380	0.10	+1.1
4,039,055	+		Psyr_3380	0.10	+0.1
4,039,056	-		Psyr_3380	0.10	-0.0
4,039,056	-		Psyr_3380	0.10	-0.9
4,039,056	-		Psyr_3380	0.10	+1.0
4,039,056	-		Psyr_3380	0.10	-1.7
4,039,056	-		Psyr_3380	0.10	-0.2
4,039,056	-		Psyr_3380	0.10	+1.4
4,039,056	-		Psyr_3380	0.10	-0.2
4,039,056	-		Psyr_3380	0.10	-0.2
4,039,056	-		Psyr_3380	0.10	+0.4
4,039,056	-		Psyr_3380	0.10	+1.3
4,039,056	-		Psyr_3380	0.10	-1.1
4,039,058	+		Psyr_3380	0.11	-1.0
4,039,058	+		Psyr_3380	0.11	-0.2
4,039,058	+		Psyr_3380	0.11	+1.3
4,039,058	+		Psyr_3380	0.11	-0.2
4,039,058	+		Psyr_3380	0.11	+0.8
4,039,058	+		Psyr_3380	0.11	-0.5
4,039,058	+		Psyr_3380	0.11	-0.3
4,039,058	+		Psyr_3380	0.11	-2.0
4,039,058	+		Psyr_3380	0.11	-0.4
4,039,058	+		Psyr_3380	0.11	+0.2
4,039,058	+		Psyr_3380	0.11	+2.3
4,039,058	+				-1.2
4,039,058	+		Psyr_3380	0.11	-0.6
4,039,059	-		Psyr_3380	0.11	-1.4
4,039,059	-		Psyr_3380	0.11	-1.5
4,039,059	-		Psyr_3380	0.11	-2.6
4,039,059	-		Psyr_3380	0.11	+0.4
4,039,059	-		Psyr_3380	0.11	-1.4
4,039,059	-		Psyr_3380	0.11	-1.8
4,039,059	-		Psyr_3380	0.11	+0.3
4,039,059	-		Psyr_3380	0.11	-0.8
4,039,059	-		Psyr_3380	0.11	-2.2
4,039,059	-				-1.6
4,039,059	-		Psyr_3380	0.11	-0.1
4,039,059	-		Psyr_3380	0.11	-0.6
4,039,059	-		Psyr_3380	0.11	+0.2
4,039,059	-		Psyr_3380	0.11	-2.2
4,039,059	-		Psyr_3380	0.11	-1.7
4,039,059	-		Psyr_3380	0.11	+0.9
4,039,059	-		Psyr_3380	0.11	+0.5
4,039,059	-		Psyr_3380	0.11	-0.4
4,039,064	+		Psyr_3380	0.11	+1.7
4,039,064	+		Psyr_3380	0.11	+0.1
4,039,064	+		Psyr_3380	0.11	+1.8
4,039,064	+		Psyr_3380	0.11	+0.2
4,039,064	+		Psyr_3380	0.11	-0.2
4,039,064	+		Psyr_3380	0.11	-2.3
4,039,064	+		Psyr_3380	0.11	-0.1
4,039,064	+		Psyr_3380	0.11	+1.3
4,039,064	+		Psyr_3380	0.11	+1.6
4,039,064	+		Psyr_3380	0.11	-3.4
4,039,064	+		Psyr_3380	0.11	+0.1
4,039,065	-		Psyr_3380	0.11	-0.8
4,039,065	-		Psyr_3380	0.11	+0.2
4,039,065	-		Psyr_3380	0.11	-1.4
4,039,065	-		Psyr_3380	0.11	+0.0
4,039,065	-		Psyr_3380	0.11	-0.5
4,039,065	-		Psyr_3380	0.11	-0.4
4,039,547	+		Psyr_3380	0.66	+0.8
4,039,547	+		Psyr_3380	0.66	-0.7
4,039,548	-		Psyr_3380	0.66	-1.5
4,039,548	-		Psyr_3380	0.66	-1.1
4,039,860	-				-1.2
4,039,860	-				-0.4
4,039,860	-				-0.6
4,039,921	+				+0.2
4,040,033	-		Psyr_3381	0.13	-1.1
4,040,798	-		Psyr_3381	0.66	-1.9
4,041,028	+		Psyr_3381	0.82	-1.6
4,041,028	+		Psyr_3381	0.82	-0.6
4,041,029	-		Psyr_3381	0.82	+0.0
4,041,029	-		Psyr_3381	0.82	-0.2
4,041,163	+				+0.3
4,041,163	+				+0.3
4,041,163	+				-0.6
4,041,163	+				+0.1
4,041,163	+				+0.5
4,041,163	+				-0.1
4,041,163	+				-2.9
4,041,163	+				+0.1
4,041,164	-				-0.7
4,041,164	-				+0.1
4,041,277	+				+0.9
4,041,277	+				-1.4
4,041,277	+				+0.2
4,041,277	+				-1.7
4,041,277	+				+0.1
4,041,277	+				-2.3
4,041,277	+				-0.6
4,041,278	-				-0.1
4,041,278	-				-0.8
4,041,278	-				+0.4
4,041,278	-				-0.7
4,041,278	-				-1.4
4,041,278	-				+0.5
4,041,278	-				+0.5
4,041,278	-				+2.5
4,041,278	-				-0.9
4,041,321	+				+0.4
4,041,321	+				-1.2
4,041,322	-				+0.8
4,041,322	-				+0.0
4,041,374	-				+0.8
4,041,374	-				-2.7
4,041,708	+				-2.0
4,041,763	-				+0.8
4,041,766	+				+0.3
4,041,766	+				+0.4
4,041,766	+				-1.4
4,041,767	-				-0.1
4,041,767	-				-3.4
4,041,855	+				+0.4
4,041,855	+				-2.8
4,041,855	+				+2.4
4,041,856	-				+0.4
4,041,856	-				+1.1
4,041,876	+				-0.6
4,041,898	-				-0.2
4,041,984	+				-0.8
4,041,985	-				-0.2
4,042,052	+				+0.6
4,042,053	-				-0.1
4,042,058	+				-2.1
4,042,059	-				+1.0
4,042,073	+				-1.6
4,042,073	+				-0.8
4,042,139	+		Psyr_3382	0.15	+0.5
4,042,139	+		Psyr_3382	0.15	+2.4
4,042,140	-		Psyr_3382	0.15	-0.2
4,042,160	+		Psyr_3382	0.17	+1.2
4,042,161	-		Psyr_3382	0.17	-0.8
4,042,161	-		Psyr_3382	0.17	-0.9
4,042,161	-		Psyr_3382	0.17	+1.8
4,042,230	+		Psyr_3382	0.26	-2.6
4,042,230	+		Psyr_3382	0.26	-0.5
4,042,230	+		Psyr_3382	0.26	-0.3
4,042,230	+		Psyr_3382	0.26	-0.1
4,042,231	-		Psyr_3382	0.26	-0.2
4,042,231	-		Psyr_3382	0.26	-2.0
4,042,231	-		Psyr_3382	0.26	-0.4
4,042,231	-		Psyr_3382	0.26	+2.3
4,042,231	-		Psyr_3382	0.26	-1.1
4,042,231	-		Psyr_3382	0.26	-0.8
4,042,231	-		Psyr_3382	0.26	+0.2
4,042,246	-		Psyr_3382	0.27	-0.6
4,042,269	+		Psyr_3382	0.30	-0.4
4,042,269	+		Psyr_3382	0.30	+0.4