Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2617

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2616 and Psyr_2617 are separated by 63 nucleotidesPsyr_2617 and Psyr_2618 are separated by 2 nucleotides Psyr_2616: Psyr_2616 - Amino acid adenylation, at 3,131,727 to 3,172,340 _2616 Psyr_2617: Psyr_2617 - Secretion protein HlyD, at 3,172,404 to 3,173,561 _2617 Psyr_2618: Psyr_2618 - ABC transporter:Protein of unknown function DUF214, at 3,173,564 to 3,175,525 _2618 Position (kb) 3172 3173 3174Strain fitness (log2 ratio) -3 -2 -1 0 1at 3172.137 kb on + strandat 3172.137 kb on + strandat 3172.338 kb on + strandat 3172.404 kb on - strandat 3172.506 kb on + strandat 3172.785 kb on + strand, within Psyr_2617at 3172.786 kb on - strand, within Psyr_2617at 3172.947 kb on + strand, within Psyr_2617at 3173.131 kb on - strand, within Psyr_2617at 3173.759 kb on + strandat 3173.759 kb on + strandat 3173.900 kb on - strand, within Psyr_2618at 3173.900 kb on - strand, within Psyr_2618at 3174.509 kb on - strand, within Psyr_2618

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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3,172,137 + +0.6
3,172,137 + -2.2
3,172,338 + -0.4
3,172,404 - -0.1
3,172,506 + +0.1
3,172,785 + Psyr_2617 0.33 -2.9
3,172,786 - Psyr_2617 0.33 -0.7
3,172,947 + Psyr_2617 0.47 -2.2
3,173,131 - Psyr_2617 0.63 -0.3
3,173,759 + -0.4
3,173,759 + -0.0
3,173,900 - Psyr_2618 0.17 -2.9
3,173,900 - Psyr_2618 0.17 -2.1
3,174,509 - Psyr_2618 0.48 -2.4

Or see this region's nucleotide sequence