Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2615

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,114,027	-				-0.9
3,114,105	-				-1.4
3,114,232	+				-0.4
3,114,263	+				+0.8
3,114,464	+				+0.7
3,114,464	+				-1.2
3,114,465	-				+0.8
3,114,539	+				-2.2
3,114,539	+				-0.7
3,114,539	+				-2.5
3,114,539	+				+0.3
3,114,540	-				+0.3
3,114,540	-				-1.0
3,114,557	+				-2.6
3,114,557	+				+0.7
3,114,557	+				-1.6
3,114,558	-				-2.9
3,114,558	-				-2.7
3,114,857	+				-1.2
3,115,064	-				-0.7
3,115,067	-				-2.3
3,115,228	+				-0.7
3,115,229	-				-1.2
3,115,229	-				-3.2
3,115,298	+				-0.4
3,115,687	+				-2.2
3,115,688	-				-2.9
3,115,732	+				+0.2
3,115,732	+				-1.0
3,115,733	-				-0.7
3,115,733	-				-0.4
3,115,733	-				+0.7
3,115,733	-				+0.3
3,116,018	+				-1.7
3,116,248	+				-0.4
3,116,249	-				-0.7
3,116,312	+				-2.2
3,116,434	-				-1.9
3,116,434	-				-1.9
3,116,838	-		Psyr_2615	0.12	-2.2
3,116,851	+		Psyr_2615	0.12	-0.4
3,116,852	-		Psyr_2615	0.12	+0.2
3,117,025	+		Psyr_2615	0.13	-1.7
3,117,025	+		Psyr_2615	0.13	-1.0
3,117,025	+		Psyr_2615	0.13	-0.9
3,117,026	-		Psyr_2615	0.13	-0.3
3,117,026	-		Psyr_2615	0.13	-1.4
3,117,028	-		Psyr_2615	0.13	-2.2
3,117,085	-		Psyr_2615	0.13	+1.0
3,117,175	+		Psyr_2615	0.14	-1.4
3,117,421	+		Psyr_2615	0.15	-3.9
3,117,445	+		Psyr_2615	0.16	-0.2
3,117,880	+		Psyr_2615	0.18	+0.3
3,117,883	+		Psyr_2615	0.18	-0.7
3,117,883	+		Psyr_2615	0.18	-0.6
3,117,883	+		Psyr_2615	0.18	-1.9
3,117,959	-		Psyr_2615	0.19	-1.0
3,118,114	-		Psyr_2615	0.20	-1.2
3,118,241	+		Psyr_2615	0.20	+0.5
3,118,241	+		Psyr_2615	0.20	-1.1
3,118,528	+		Psyr_2615	0.22	-0.8
3,118,528	+		Psyr_2615	0.22	-2.0
3,118,529	-		Psyr_2615	0.22	+0.3
3,118,533	-		Psyr_2615	0.22	+0.2
3,118,533	-		Psyr_2615	0.22	-2.0
3,118,533	-		Psyr_2615	0.22	-0.6
3,118,728	+		Psyr_2615	0.23	-0.7
3,118,729	-		Psyr_2615	0.23	-1.1
3,118,729	-		Psyr_2615	0.23	+2.9
3,118,729	-		Psyr_2615	0.23	-1.1
3,118,729	-		Psyr_2615	0.23	-2.0
3,118,730	+		Psyr_2615	0.23	-1.3
3,118,731	-		Psyr_2615	0.23	-1.9
3,118,731	-		Psyr_2615	0.23	-0.2
3,118,808	+		Psyr_2615	0.24	-1.2
3,118,808	+		Psyr_2615	0.24	+0.5
3,118,808	+		Psyr_2615	0.24	+0.0
3,118,809	-		Psyr_2615	0.24	-1.0
3,118,809	-		Psyr_2615	0.24	-0.6
3,118,812	+		Psyr_2615	0.24	+0.4
3,118,966	+		Psyr_2615	0.25	-2.0
3,118,966	+		Psyr_2615	0.25	-2.2
3,118,966	+		Psyr_2615	0.25	-0.6
3,119,075	+		Psyr_2615	0.25	-1.4
3,119,076	-		Psyr_2615	0.25	-0.8
3,119,313	+		Psyr_2615	0.27	-1.3
3,119,314	-				-0.4
3,119,677	-		Psyr_2615	0.29	-3.5
3,119,730	-		Psyr_2615	0.29	-1.0
3,120,088	+		Psyr_2615	0.32	-1.3
3,120,088	+		Psyr_2615	0.32	-0.1
3,120,088	+		Psyr_2615	0.32	-1.0
3,120,088	+		Psyr_2615	0.32	-0.4
3,120,090	+		Psyr_2615	0.32	-1.3
3,120,090	+		Psyr_2615	0.32	-0.8
3,120,090	+		Psyr_2615	0.32	+1.0
3,120,090	+		Psyr_2615	0.32	+1.3
3,120,091	-		Psyr_2615	0.32	-0.8
3,120,253	+		Psyr_2615	0.33	-0.2
3,120,682	+		Psyr_2615	0.35	+0.1
3,120,761	-		Psyr_2615	0.36	-1.4
3,120,919	+		Psyr_2615	0.37	-0.2
3,120,968	-		Psyr_2615	0.37	-3.3
3,121,117	+		Psyr_2615	0.38	-0.6
3,121,118	-		Psyr_2615	0.38	-2.4
3,121,118	-		Psyr_2615	0.38	-0.4
3,121,120	+		Psyr_2615	0.38	+1.6
3,121,120	+		Psyr_2615	0.38	+1.2
3,121,195	+		Psyr_2615	0.38	-1.6
3,121,195	+		Psyr_2615	0.38	-1.7
3,121,213	+		Psyr_2615	0.39	+0.7
3,121,310	-		Psyr_2615	0.39	-0.2
3,121,582	+		Psyr_2615	0.41	+0.6
3,121,582	+		Psyr_2615	0.41	-0.2
3,121,582	+		Psyr_2615	0.41	-1.9
3,121,680	+		Psyr_2615	0.41	-1.6
3,121,681	-		Psyr_2615	0.41	-0.9
3,121,717	+		Psyr_2615	0.42	+1.3
3,121,718	-		Psyr_2615	0.42	-0.0
3,121,750	+		Psyr_2615	0.42	-2.8
3,122,188	+		Psyr_2615	0.44	-1.2
3,122,188	+		Psyr_2615	0.44	-1.9
3,122,188	+		Psyr_2615	0.44	-0.7
3,122,189	-		Psyr_2615	0.44	-0.9
3,122,189	-		Psyr_2615	0.44	-2.0
3,122,189	-		Psyr_2615	0.44	+0.1
3,122,189	-		Psyr_2615	0.44	-0.2
3,122,189	-		Psyr_2615	0.44	+0.5
3,122,189	-		Psyr_2615	0.44	-3.6
3,122,189	-		Psyr_2615	0.44	-2.6
3,122,189	-		Psyr_2615	0.44	-1.0
3,122,667	-		Psyr_2615	0.47	+0.6
3,122,841	+		Psyr_2615	0.48	-1.6
3,122,865	-		Psyr_2615	0.49	-1.9
3,122,887	+		Psyr_2615	0.49	-0.6
3,122,887	+		Psyr_2615	0.49	-0.6
3,122,888	-		Psyr_2615	0.49	+1.2
3,122,888	-		Psyr_2615	0.49	-2.0
3,122,889	+		Psyr_2615	0.49	+0.1
3,123,119	-		Psyr_2615	0.50	-0.4
3,123,245	+		Psyr_2615	0.51	-1.2
3,123,265	+		Psyr_2615	0.51	+0.4
3,123,265	+		Psyr_2615	0.51	-1.0
3,123,265	+		Psyr_2615	0.51	+0.6
3,123,265	+		Psyr_2615	0.51	-1.0
3,123,265	+		Psyr_2615	0.51	-0.3
3,123,265	+		Psyr_2615	0.51	+0.3
3,123,266	-		Psyr_2615	0.51	+0.2
3,123,266	-		Psyr_2615	0.51	+0.6
3,123,266	-		Psyr_2615	0.51	-2.0
3,123,460	+		Psyr_2615	0.52	-0.7
3,123,461	-		Psyr_2615	0.52	-2.1
3,123,461	-		Psyr_2615	0.52	-2.7
3,123,469	+		Psyr_2615	0.52	-3.4
3,123,469	+		Psyr_2615	0.52	-1.0
3,123,469	+		Psyr_2615	0.52	-1.2
3,123,469	+		Psyr_2615	0.52	-1.0
3,123,470	-		Psyr_2615	0.52	-1.8
3,123,728	+		Psyr_2615	0.54	-3.2
3,123,922	+		Psyr_2615	0.55	-1.5
3,123,988	+		Psyr_2615	0.55	+0.4
3,123,989	-		Psyr_2615	0.55	-1.2
3,124,042	+		Psyr_2615	0.56	-0.1
3,124,042	+		Psyr_2615	0.56	-1.1
3,124,043	-		Psyr_2615	0.56	+0.8
3,124,043	-		Psyr_2615	0.56	+0.0
3,124,073	-		Psyr_2615	0.56	-2.7
3,124,147	+		Psyr_2615	0.56	-2.7
3,124,345	+		Psyr_2615	0.58	-2.2
3,124,345	+		Psyr_2615	0.58	+0.2
3,124,346	-		Psyr_2615	0.58	-2.4
3,124,346	-		Psyr_2615	0.58	-0.4
3,124,423	+		Psyr_2615	0.58	-1.4
3,124,423	+		Psyr_2615	0.58	-1.4
3,124,442	-		Psyr_2615	0.58	-2.1
3,124,442	-		Psyr_2615	0.58	+1.2
3,124,592	+		Psyr_2615	0.59	-0.4
3,124,592	+		Psyr_2615	0.59	-1.3
3,124,677	+		Psyr_2615	0.60	-1.0
3,124,678	-		Psyr_2615	0.60	-2.2
3,124,678	-		Psyr_2615	0.60	-2.5
3,124,678	-		Psyr_2615	0.60	-2.7
3,124,912	+		Psyr_2615	0.61	-3.3
3,124,938	+		Psyr_2615	0.61	-0.1
3,124,983	-		Psyr_2615	0.61	-2.0
3,124,983	-		Psyr_2615	0.61	-1.9
3,125,417	-		Psyr_2615	0.64	+0.7
3,125,417	-		Psyr_2615	0.64	-0.4
3,125,417	-		Psyr_2615	0.64	-0.4
3,125,417	-		Psyr_2615	0.64	+1.5
3,125,688	-		Psyr_2615	0.66	-3.0
3,126,112	+		Psyr_2615	0.68	-2.0
3,126,113	-		Psyr_2615	0.68	-0.3
3,126,113	-		Psyr_2615	0.68	-1.7
3,126,114	+		Psyr_2615	0.68	-0.0
3,126,490	+		Psyr_2615	0.71	-0.3
3,126,619	+		Psyr_2615	0.71	-2.1
3,126,704	-		Psyr_2615	0.72	+0.6
3,126,704	-		Psyr_2615	0.72	-0.6
3,126,704	-		Psyr_2615	0.72	+0.5
3,126,704	-		Psyr_2615	0.72	-0.6
3,126,935	-		Psyr_2615	0.73	-0.8
3,126,935	-		Psyr_2615	0.73	+0.0
3,126,935	-		Psyr_2615	0.73	-1.4
3,126,935	-		Psyr_2615	0.73	-2.6
3,126,935	-		Psyr_2615	0.73	-1.3
3,127,116	+		Psyr_2615	0.74	-1.2
3,127,136	-		Psyr_2615	0.75	-1.3
3,127,136	-		Psyr_2615	0.75	-1.9
3,127,136	-		Psyr_2615	0.75	-0.7
3,127,168	+		Psyr_2615	0.75	+1.6
3,127,168	+		Psyr_2615	0.75	-0.1
3,127,169	-		Psyr_2615	0.75	+1.3
3,127,169	-		Psyr_2615	0.75	-2.2
3,127,169	-		Psyr_2615	0.75	-1.4
3,127,169	-		Psyr_2615	0.75	-2.0
3,127,171	+		Psyr_2615	0.75	-3.0
3,127,228	-		Psyr_2615	0.75	-0.3
3,127,300	+		Psyr_2615	0.76	-0.7
3,127,301	-		Psyr_2615	0.76	+0.9
3,127,454	-		Psyr_2615	0.77	+2.4
3,127,454	-		Psyr_2615	0.77	-1.0
3,127,535	-		Psyr_2615	0.77	-0.2
3,127,604	-		Psyr_2615	0.77	-0.7
3,127,604	-		Psyr_2615	0.77	-1.5
3,127,681	+		Psyr_2615	0.78	-0.4
3,127,681	+		Psyr_2615	0.78	+0.8
3,127,681	+		Psyr_2615	0.78	-1.6
3,127,681	+		Psyr_2615	0.78	-2.9
3,127,682	-		Psyr_2615	0.78	-0.6
3,127,699	+		Psyr_2615	0.78	-0.5
3,127,700	-		Psyr_2615	0.78	-1.4
3,127,700	-		Psyr_2615	0.78	-0.9
3,128,118	-		Psyr_2615	0.81	-0.4
3,128,127	-		Psyr_2615	0.81	-0.2
3,128,519	-		Psyr_2615	0.83	-0.1
3,128,674	+		Psyr_2615	0.84	-2.4
3,128,674	+		Psyr_2615	0.84	-1.0
3,129,186	+		Psyr_2615	0.87	-0.7
3,129,186	+		Psyr_2615	0.87	-1.0
3,129,187	-		Psyr_2615	0.87	-0.8
3,129,187	-		Psyr_2615	0.87	-0.2
3,129,277	+		Psyr_2615	0.88	-1.7
3,129,748	+				-2.5
3,129,748	+				-1.1
3,129,749	-				-1.5
3,129,790	+				+2.2
3,129,967	+				-0.5
3,129,968	-				-0.4
3,130,387	+				+0.7
3,130,388	-				-0.7
3,130,465	+				-0.9
3,130,466	-				-0.4
3,130,519	+				-0.7
3,130,520	-				-0.7
3,130,520	-				-1.6
3,130,538	+				+0.6
3,130,624	+				-1.6
3,130,624	+				-0.8
3,130,822	+				+0.0
3,130,823	-				+1.3
3,130,900	+				-0.4
3,130,900	+				-0.4
3,130,900	+				-2.1
3,130,901	-				+1.6
3,130,901	-				-0.6
3,130,901	-				-1.0
3,130,901	-				-2.2
3,130,901	-				-1.5
3,130,918	+				-1.4
3,130,920	+				-0.8
3,131,255	+				-1.8
3,131,596	+				+0.5
3,131,596	+				+0.3
3,131,597	-				+1.9
3,131,597	-				-0.7
3,131,661	-				-2.4
3,131,661	-				-0.6
3,131,709	+				+0.1
3,131,874	-				+0.1
3,131,874	-				-2.2
3,132,087	+				-2.4