Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2614

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,097,868	+		Psyr_2613	0.50	-1.0
3,097,868	+		Psyr_2613	0.50	-2.3
3,097,869	-		Psyr_2613	0.50	+1.2
3,097,869	-		Psyr_2613	0.50	-2.7
3,097,927	+		Psyr_2613	0.53	-2.6
3,097,928	-		Psyr_2613	0.53	-1.7
3,098,061	+		Psyr_2613	0.61	-1.0
3,098,062	-		Psyr_2613	0.61	-2.3
3,098,073	-				-0.4
3,098,073	-		Psyr_2613	0.62	+0.3
3,098,073	-		Psyr_2613	0.62	+0.0
3,098,073	-		Psyr_2613	0.62	-2.4
3,098,073	-		Psyr_2613	0.62	-1.6
3,098,207	+		Psyr_2613	0.70	-0.4
3,098,207	+		Psyr_2613	0.70	-2.9
3,098,375	+		Psyr_2613	0.80	-2.2
3,098,376	-		Psyr_2613	0.80	-1.2
3,098,615	-				+0.2
3,098,630	+				-2.9
3,098,857	+				-0.2
3,098,857	+				+0.7
3,098,858	-				-0.7
3,098,890	+				-1.0
3,098,890	+				-2.4
3,098,890	+				-1.4
3,098,930	+				-0.4
3,098,930	+				-1.2
3,098,930	+				-0.6
3,098,930	+				-1.0
3,098,930	+				+0.6
3,098,930	+				-0.9
3,098,931	-				-2.6
3,099,213	+				-0.3
3,099,214	-				-2.6
3,099,214	-				-0.4
3,099,214	-				-0.6
3,099,245	+				-0.0
3,099,245	+				-0.6
3,099,257	+				-0.6
3,099,323	+				-0.4
3,099,371	+				-1.6
3,099,371	+				-1.9
3,099,452	+				-3.0
3,099,632	+				-1.6
3,099,632	+				-0.6
3,099,632	+				-1.1
3,099,638	+				-0.4
3,099,638	+				-1.6
3,099,638	+				+0.6
3,099,917	+				-1.6
3,099,918	-				-0.9
3,099,918	-				-3.9
3,100,015	-				-2.3
3,100,052	+				+0.4
3,100,058	+				+0.6
3,100,071	-				-1.9
3,100,470	-		Psyr_2614	0.11	-1.9
3,100,560	+		Psyr_2614	0.11	-2.4
3,100,595	-		Psyr_2614	0.11	-0.9
3,100,598	+		Psyr_2614	0.11	-0.4
3,100,599	-		Psyr_2614	0.11	-3.1
3,100,599	-		Psyr_2614	0.11	-2.3
3,100,674	-		Psyr_2614	0.12	-0.4
3,100,674	-		Psyr_2614	0.12	-0.4
3,100,682	+		Psyr_2614	0.12	+0.6
3,100,682	+		Psyr_2614	0.12	-1.2
3,100,682	+		Psyr_2614	0.12	-1.7
3,100,683	-		Psyr_2614	0.12	+0.4
3,100,683	-		Psyr_2614	0.12	+1.1
3,100,683	-		Psyr_2614	0.12	-1.0
3,100,683	-		Psyr_2614	0.12	-1.4
3,100,683	-		Psyr_2614	0.12	-2.7
3,100,683	-		Psyr_2614	0.12	-0.0
3,100,732	+		Psyr_2614	0.12	-1.0
3,100,732	+		Psyr_2614	0.12	-2.0
3,100,913	+		Psyr_2614	0.13	-1.4
3,100,913	+		Psyr_2614	0.13	-0.6
3,100,913	+		Psyr_2614	0.13	-2.9
3,100,914	-		Psyr_2614	0.13	-1.4
3,100,914	-		Psyr_2614	0.13	-1.4
3,100,914	-		Psyr_2614	0.13	-1.7
3,101,080	+		Psyr_2614	0.14	-1.5
3,101,115	-		Psyr_2614	0.15	+1.4
3,101,147	+		Psyr_2614	0.15	+0.6
3,101,280	-		Psyr_2614	0.16	-1.6
3,101,432	+		Psyr_2614	0.16	-0.5
3,101,545	-		Psyr_2614	0.17	-3.2
3,101,582	+		Psyr_2614	0.17	+1.0
3,101,582	+		Psyr_2614	0.17	-0.3
3,101,582	+		Psyr_2614	0.17	+0.6
3,101,583	-		Psyr_2614	0.17	-0.4
3,101,583	-		Psyr_2614	0.17	-2.0
3,101,771	+		Psyr_2614	0.19	-2.6
3,101,771	+		Psyr_2614	0.19	-2.5
3,102,046	+		Psyr_2614	0.20	-0.3
3,102,046	+		Psyr_2614	0.20	-3.1
3,102,046	+		Psyr_2614	0.20	-0.2
3,102,046	+		Psyr_2614	0.20	-0.2
3,102,047	-		Psyr_2614	0.20	-0.0
3,102,143	-		Psyr_2614	0.21	-3.4
3,102,146	+		Psyr_2614	0.21	-0.9
3,102,147	-		Psyr_2614	0.21	-0.4
3,102,518	-		Psyr_2614	0.23	-0.6
3,102,518	-		Psyr_2614	0.23	-1.2
3,102,518	-		Psyr_2614	0.23	-1.0
3,102,518	-		Psyr_2614	0.23	-2.3
3,102,931	+		Psyr_2614	0.26	-0.9
3,102,997	+		Psyr_2614	0.26	-1.2
3,103,284	+		Psyr_2614	0.28	-0.3
3,103,424	-		Psyr_2614	0.29	-0.2
3,103,568	+		Psyr_2614	0.30	-0.8
3,103,569	-		Psyr_2614	0.30	+1.2
3,103,569	-		Psyr_2614	0.30	-0.4
3,103,779	-		Psyr_2614	0.31	-1.4
3,103,779	-		Psyr_2614	0.31	-2.7
3,103,953	+		Psyr_2614	0.32	-2.1
3,103,953	+		Psyr_2614	0.32	+0.7
3,103,953	+		Psyr_2614	0.32	-1.8
3,103,954	-		Psyr_2614	0.32	-3.2
3,103,954	-		Psyr_2614	0.32	-1.7
3,103,962	+		Psyr_2614	0.32	-1.0
3,103,962	+		Psyr_2614	0.32	-0.2
3,103,963	-		Psyr_2614	0.32	+0.0
3,103,963	-		Psyr_2614	0.32	-2.0
3,103,963	-		Psyr_2614	0.32	-0.4
3,103,963	-		Psyr_2614	0.32	-1.3
3,103,967	+		Psyr_2614	0.32	+0.2
3,103,968	-		Psyr_2614	0.32	-2.1
3,103,968	-		Psyr_2614	0.32	-0.4
3,103,968	-		Psyr_2614	0.32	+0.3
3,103,968	-		Psyr_2614	0.32	+0.7
3,104,083	+		Psyr_2614	0.33	-0.2
3,104,083	+		Psyr_2614	0.33	+0.6
3,104,240	+		Psyr_2614	0.34	-1.7
3,104,240	+		Psyr_2614	0.34	+0.1
3,104,241	-		Psyr_2614	0.34	-0.2
3,104,241	-		Psyr_2614	0.34	-0.3
3,104,241	-		Psyr_2614	0.34	+1.6
3,104,516	+		Psyr_2614	0.36	-0.7
3,104,517	-		Psyr_2614	0.36	+1.2
3,104,517	-		Psyr_2614	0.36	-1.4
3,104,570	+		Psyr_2614	0.36	+0.1
3,104,571	-		Psyr_2614	0.36	-1.4
3,104,571	-		Psyr_2614	0.36	+0.6
3,104,687	+		Psyr_2614	0.37	-2.4
3,104,689	+		Psyr_2614	0.37	-0.1
3,104,690	-		Psyr_2614	0.37	-0.7
3,104,690	-		Psyr_2614	0.37	+0.0
3,104,735	+		Psyr_2614	0.37	-2.2
3,104,735	+		Psyr_2614	0.37	-0.7
3,104,735	+		Psyr_2614	0.37	-0.7
3,104,735	+		Psyr_2614	0.37	+1.0
3,104,735	+		Psyr_2614	0.37	-1.0
3,104,735	+		Psyr_2614	0.37	-0.3
3,104,735	+		Psyr_2614	0.37	+0.3
3,104,735	+		Psyr_2614	0.37	-0.7
3,104,736	-		Psyr_2614	0.37	+0.4
3,104,736	-		Psyr_2614	0.37	-2.2
3,104,736	-		Psyr_2614	0.37	-1.4
3,104,736	-		Psyr_2614	0.37	-0.6
3,104,736	-		Psyr_2614	0.37	-0.4
3,104,736	-		Psyr_2614	0.37	-1.0
3,104,736	-		Psyr_2614	0.37	-1.0
3,104,736	-		Psyr_2614	0.37	-0.6
3,104,736	-		Psyr_2614	0.37	-1.2
3,104,736	-				-0.4
3,104,736	-		Psyr_2614	0.37	-0.7
3,104,736	-		Psyr_2614	0.37	-0.7
3,104,736	-		Psyr_2614	0.37	-0.6
3,104,736	-		Psyr_2614	0.37	-2.4
3,104,963	+		Psyr_2614	0.38	-2.1
3,104,963	+		Psyr_2614	0.38	-0.8
3,104,964	-		Psyr_2614	0.38	-1.2
3,104,964	-		Psyr_2614	0.38	+1.2
3,104,964	-		Psyr_2614	0.38	-3.1
3,104,981	+		Psyr_2614	0.38	-0.8
3,104,981	+		Psyr_2614	0.38	-1.2
3,104,981	+		Psyr_2614	0.38	+2.2
3,104,985	+		Psyr_2614	0.39	+0.6
3,104,986	-		Psyr_2614	0.39	-0.6
3,104,986	-		Psyr_2614	0.39	-2.2
3,104,986	-		Psyr_2614	0.39	-0.3
3,104,986	-		Psyr_2614	0.39	-0.2
3,104,986	-		Psyr_2614	0.39	+0.4
3,105,561	+		Psyr_2614	0.42	+0.2
3,105,562	-		Psyr_2614	0.42	+1.6
3,105,562	-		Psyr_2614	0.42	-2.2
3,105,957	-		Psyr_2614	0.45	+1.3
3,106,255	+		Psyr_2614	0.46	-0.3
3,106,255	+				+0.6
3,106,557	-		Psyr_2614	0.48	-2.0
3,106,651	+		Psyr_2614	0.49	-2.6
3,106,652	-		Psyr_2614	0.49	-1.5
3,106,891	+		Psyr_2614	0.50	-0.8
3,106,892	-		Psyr_2614	0.50	-2.0
3,107,027	+		Psyr_2614	0.51	-2.5
3,107,027	+		Psyr_2614	0.51	+1.6
3,107,028	-		Psyr_2614	0.51	-1.4
3,107,028	-		Psyr_2614	0.51	-0.0
3,107,225	+		Psyr_2614	0.52	-0.6
3,107,226	-		Psyr_2614	0.52	-0.0
3,107,226	-		Psyr_2614	0.52	+0.3
3,107,234	+		Psyr_2614	0.52	-2.0
3,107,234	+		Psyr_2614	0.52	-0.3
3,107,234	+		Psyr_2614	0.52	-0.0
3,107,235	-		Psyr_2614	0.52	-1.2
3,107,235	-		Psyr_2614	0.52	-0.7
3,107,235	-		Psyr_2614	0.52	-0.3
3,107,235	-		Psyr_2614	0.52	+0.2
3,107,235	-		Psyr_2614	0.52	-1.0
3,107,494	-		Psyr_2614	0.54	-0.4
3,107,494	-		Psyr_2614	0.54	-1.4
3,107,525	+		Psyr_2614	0.54	-1.7
3,107,526	-		Psyr_2614	0.54	-2.6
3,107,753	+		Psyr_2614	0.56	+0.6
3,107,754	-		Psyr_2614	0.56	-0.7
3,107,754	-		Psyr_2614	0.56	-0.4
3,107,754	-		Psyr_2614	0.56	-0.2
3,107,754	-		Psyr_2614	0.56	+0.6
3,107,807	+		Psyr_2614	0.56	-1.4
3,107,807	+		Psyr_2614	0.56	-2.3
3,107,807	+		Psyr_2614	0.56	-1.2
3,107,807	+		Psyr_2614	0.56	-1.0
3,107,808	-		Psyr_2614	0.56	-2.1
3,107,808	-		Psyr_2614	0.56	-1.3
3,108,064	-		Psyr_2614	0.58	-1.5
3,108,111	-		Psyr_2614	0.58	-2.9
3,108,111	-		Psyr_2614	0.58	-1.2
3,108,188	+		Psyr_2614	0.58	-0.7
3,108,188	+		Psyr_2614	0.58	-1.4
3,108,188	+		Psyr_2614	0.58	-2.2
3,108,188	+		Psyr_2614	0.58	+2.2
3,108,188	+		Psyr_2614	0.58	+0.3
3,108,189	-		Psyr_2614	0.58	-0.6
3,108,189	-		Psyr_2614	0.58	-0.8
3,108,189	-		Psyr_2614	0.58	+0.4
3,108,190	+		Psyr_2614	0.58	+1.2
3,108,190	+		Psyr_2614	0.58	-1.2
3,108,190	+		Psyr_2614	0.58	-0.1
3,108,191	-		Psyr_2614	0.58	-1.6
3,108,207	-		Psyr_2614	0.59	+0.0
3,108,647	+		Psyr_2614	0.61	-1.7
3,108,647	+		Psyr_2614	0.61	-1.7
3,108,648	-		Psyr_2614	0.61	-1.7
3,108,648	-		Psyr_2614	0.61	+0.2
3,108,859	+		Psyr_2614	0.63	-1.7
3,108,860	-		Psyr_2614	0.63	+0.2
3,109,310	+		Psyr_2614	0.65	-2.0
3,109,310	+		Psyr_2614	0.65	-0.4
3,109,311	-		Psyr_2614	0.65	-4.0
3,109,311	-		Psyr_2614	0.65	-2.9
3,109,311	-		Psyr_2614	0.65	+1.0
3,109,371	+		Psyr_2614	0.66	-1.5
3,109,371	+		Psyr_2614	0.66	-2.9
3,109,374	+		Psyr_2614	0.66	-0.3
3,109,809	-		Psyr_2614	0.68	-1.7
3,110,085	+		Psyr_2614	0.70	-1.0
3,110,086	-		Psyr_2614	0.70	-0.3
3,110,378	+		Psyr_2614	0.72	-0.7
3,110,379	-		Psyr_2614	0.72	-2.2
3,110,379	-		Psyr_2614	0.72	-0.2
3,110,379	-		Psyr_2614	0.72	-2.6
3,110,682	-		Psyr_2614	0.74	-0.2
3,110,790	-		Psyr_2614	0.75	-1.2
3,110,790	-		Psyr_2614	0.75	-0.4
3,110,886	-		Psyr_2614	0.75	-0.1
3,110,886	-		Psyr_2614	0.75	-0.0
3,111,242	+		Psyr_2614	0.77	-1.7
3,111,320	+		Psyr_2614	0.78	+0.1
3,111,321	-		Psyr_2614	0.78	-2.9
3,111,670	-		Psyr_2614	0.80	-0.7
3,111,806	-		Psyr_2614	0.81	+0.7
3,111,809	+		Psyr_2614	0.81	-0.2
3,111,810	-		Psyr_2614	0.81	-4.1
3,111,842	+		Psyr_2614	0.81	-0.3
3,111,876	-		Psyr_2614	0.81	-0.8
3,112,210	+		Psyr_2614	0.83	-0.8
3,112,211	-		Psyr_2614	0.83	-1.8
3,112,313	+		Psyr_2614	0.84	-0.2
3,112,313	+		Psyr_2614	0.84	-1.2
3,112,313	+		Psyr_2614	0.84	-0.9
3,112,313	+		Psyr_2614	0.84	-0.4
3,112,314	-		Psyr_2614	0.84	-0.6
3,112,314	-		Psyr_2614	0.84	+2.4
3,112,396	+		Psyr_2614	0.84	-3.1
3,112,397	-		Psyr_2614	0.84	-2.7
3,112,660	+		Psyr_2614	0.86	-1.4
3,112,830	-		Psyr_2614	0.87	+0.2
3,112,845	+		Psyr_2614	0.87	-1.4
3,112,887	+		Psyr_2614	0.88	-2.2
3,112,887	+		Psyr_2614	0.88	+0.1
3,112,915	+		Psyr_2614	0.88	-0.6
3,112,919	+		Psyr_2614	0.88	-1.0
3,113,014	+		Psyr_2614	0.88	-0.1
3,113,014	+		Psyr_2614	0.88	+0.1
3,113,014	+		Psyr_2614	0.88	+1.2
3,113,014	+		Psyr_2614	0.88	-0.0
3,113,394	+				-0.1
3,113,395	-				-1.4
3,113,432	+				-2.4
3,113,432	+				-1.0
3,113,433	-				-2.6
3,113,433	-				+1.2
3,113,433	-				-1.4
3,113,598	-				+0.5
3,113,598	-				+1.3
3,113,598	-				-0.4
3,113,606	+				-1.7
3,113,606	+				-1.4
3,113,606	+				+0.5
3,113,607	-				+0.6
3,113,756	+				-0.9
3,113,756	+				-0.5
3,113,756	+				-1.3
3,113,757	-				-0.0
3,114,027	-				-0.9
3,114,105	-				-1.4
3,114,232	+				-0.4
3,114,263	+				+0.8
3,114,464	+				+0.7
3,114,464	+				-1.2
3,114,465	-				+0.8
3,114,539	+				-2.2
3,114,539	+				-0.7
3,114,539	+				-2.5
3,114,539	+				+0.3
3,114,540	-				+0.3
3,114,540	-				-1.0
3,114,557	+				-2.6
3,114,557	+				+0.7
3,114,557	+				-1.6
3,114,558	-				-2.9
3,114,558	-				-2.7
3,114,857	+				-1.2
3,115,064	-				-0.7
3,115,067	-				-2.3
3,115,228	+				-0.7
3,115,229	-				-1.2
3,115,229	-				-3.2
3,115,298	+				-0.4
3,115,687	+				-2.2
3,115,688	-				-2.9
3,115,732	+				+0.2
3,115,732	+				-1.0
3,115,733	-				-0.7
3,115,733	-				-0.4
3,115,733	-				+0.7
3,115,733	-				+0.3