Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1161

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,314,815	+				+1.8
1,314,819	+				+0.9
1,314,820	-				+1.2
1,314,820	-				-2.3
1,314,830	+				-0.7
1,314,831	-				-0.6
1,314,831	-				+2.0
1,314,831	-				+1.6
1,314,875	+				+1.7
1,314,875	+				+1.7
1,314,876	-				-1.4
1,314,876	-				+0.0
1,314,876	-				+0.6
1,314,876	-				+0.2
1,314,876	-				+0.6
1,314,876	-				-1.7
1,314,876	-				-0.5
1,314,876	-				-0.2
1,314,896	-		Psyr_1160	0.12	-0.0
1,314,896	-		Psyr_1160	0.12	+2.0
1,314,901	+		Psyr_1160	0.12	-0.3
1,314,901	+		Psyr_1160	0.12	+1.3
1,314,902	-		Psyr_1160	0.13	+0.9
1,314,902	-		Psyr_1160	0.13	+0.7
1,314,948	+		Psyr_1160	0.19	+1.5
1,314,948	+		Psyr_1160	0.19	-1.1
1,314,948	+		Psyr_1160	0.19	-1.1
1,314,949	-		Psyr_1160	0.19	+0.4
1,314,950	+		Psyr_1160	0.19	+3.0
1,314,950	+		Psyr_1160	0.19	+0.0
1,314,950	+		Psyr_1160	0.19	-0.2
1,314,950	+		Psyr_1160	0.19	+0.8
1,314,950	+		Psyr_1160	0.19	-1.4
1,314,951	-		Psyr_1160	0.19	+2.1
1,314,951	-		Psyr_1160	0.19	+1.0
1,314,951	-		Psyr_1160	0.19	+0.2
1,314,951	-		Psyr_1160	0.19	+0.7
1,314,951	-		Psyr_1160	0.19	-1.4
1,314,951	-		Psyr_1160	0.19	+1.5
1,314,951	-		Psyr_1160	0.19	+0.4
1,314,951	-		Psyr_1160	0.19	-0.1
1,314,951	-		Psyr_1160	0.19	-0.3
1,315,246	+		Psyr_1160	0.59	+0.2
1,315,246	+		Psyr_1160	0.59	-0.3
1,315,246	+		Psyr_1160	0.59	-0.9
1,315,246	+		Psyr_1160	0.59	-1.3
1,315,246	+		Psyr_1160	0.59	+1.3
1,315,246	+		Psyr_1160	0.59	+1.8
1,315,246	+		Psyr_1160	0.59	+1.8
1,315,246	+		Psyr_1160	0.59	+0.5
1,315,247	-		Psyr_1160	0.59	-1.6
1,315,247	-		Psyr_1160	0.59	-0.1
1,315,247	-		Psyr_1160	0.59	-0.2
1,315,247	-		Psyr_1160	0.59	-1.4
1,315,250	+		Psyr_1160	0.59	+0.9
1,315,250	+		Psyr_1160	0.59	-0.2
1,315,251	-		Psyr_1160	0.59	+2.2
1,315,253	-		Psyr_1160	0.60	-1.0
1,315,253	-		Psyr_1160	0.60	+0.0
1,315,408	+		Psyr_1160	0.80	+1.2
1,315,408	+		Psyr_1160	0.80	-0.1
1,315,408	+		Psyr_1160	0.80	-0.5
1,315,408	+		Psyr_1160	0.80	-0.3
1,315,408	+		Psyr_1160	0.80	+0.7
1,315,408	+		Psyr_1160	0.80	+1.4
1,315,408	+		Psyr_1160	0.80	+0.4
1,315,408	+		Psyr_1160	0.80	-0.8
1,315,409	-		Psyr_1160	0.80	+1.0
1,315,409	-		Psyr_1160	0.80	-0.1
1,315,409	-		Psyr_1160	0.80	-2.7
1,315,409	-		Psyr_1160	0.80	+0.5
1,315,409	-		Psyr_1160	0.80	-0.3
1,315,432	-		Psyr_1160	0.84	+0.1
1,315,432	-		Psyr_1160	0.84	-0.1
1,315,477	+		Psyr_1160	0.90	+1.2
1,315,553	-				+2.6
1,315,574	-				+0.4
1,315,617	+				+2.3
1,315,617	+				-0.3
1,315,618	-				+0.8
1,315,618	-				-0.3
1,315,654	+				-0.6
1,315,655	-				-1.6
1,315,716	+				+0.5
1,315,716	+				-0.5
1,315,716	+				-1.6
1,315,716	+				+0.2
1,315,717	-				+1.5
1,315,717	-				-0.6
1,315,717	-				+1.0
1,315,737	+		Psyr_1161	0.11	+1.0
1,315,737	+		Psyr_1161	0.11	-0.1
1,315,737	+		Psyr_1161	0.11	-1.8
1,315,737	+		Psyr_1161	0.11	-1.3
1,315,737	+		Psyr_1161	0.11	-2.0
1,315,737	+		Psyr_1161	0.11	+1.4
1,315,738	-		Psyr_1161	0.11	+1.4
1,315,738	-		Psyr_1161	0.11	+2.2
1,315,738	-		Psyr_1161	0.11	-2.4
1,315,738	-		Psyr_1161	0.11	-0.1
1,315,738	-		Psyr_1161	0.11	+0.2
1,315,758	+		Psyr_1161	0.14	+0.5
1,315,816	+		Psyr_1161	0.22	-1.3
1,315,816	+		Psyr_1161	0.22	+1.3
1,315,816	+		Psyr_1161	0.22	+1.2
1,315,816	+		Psyr_1161	0.22	+1.1
1,315,816	+		Psyr_1161	0.22	+0.0
1,315,816	+		Psyr_1161	0.22	+0.7
1,315,817	-		Psyr_1161	0.23	-0.6
1,315,817	-		Psyr_1161	0.23	-2.0
1,315,817	-		Psyr_1161	0.23	-0.7
1,315,817	-		Psyr_1161	0.23	+0.6
1,315,820	+		Psyr_1161	0.23	-2.5
1,315,820	+		Psyr_1161	0.23	+0.3
1,315,820	+		Psyr_1161	0.23	-2.1
1,315,820	+		Psyr_1161	0.23	+1.3
1,315,820	+		Psyr_1161	0.23	-2.3
1,315,820	+		Psyr_1161	0.23	-2.6
1,315,820	+		Psyr_1161	0.23	+1.9
1,315,820	+		Psyr_1161	0.23	+1.9
1,315,820	+		Psyr_1161	0.23	-0.6
1,315,820	+		Psyr_1161	0.23	-0.2
1,315,820	+		Psyr_1161	0.23	+1.6
1,315,820	+		Psyr_1161	0.23	+0.2
1,315,820	+		Psyr_1161	0.23	+1.3
1,315,820	+		Psyr_1161	0.23	+0.4
1,315,821	-		Psyr_1161	0.23	-1.8
1,315,821	-		Psyr_1161	0.23	+0.8
1,315,821	-		Psyr_1161	0.23	+0.5
1,315,821	-		Psyr_1161	0.23	+1.0
1,315,821	-		Psyr_1161	0.23	+1.3
1,315,821	-		Psyr_1161	0.23	-1.4
1,315,821	-		Psyr_1161	0.23	-0.6
1,315,821	-		Psyr_1161	0.23	-1.1
1,315,821	-		Psyr_1161	0.23	-0.1
1,315,821	-		Psyr_1161	0.23	+1.0
1,315,821	-		Psyr_1161	0.23	+0.0
1,315,821	-		Psyr_1161	0.23	+0.7
1,315,821	-		Psyr_1161	0.23	-0.6
1,315,821	-		Psyr_1161	0.23	+1.5
1,315,821	-		Psyr_1161	0.23	-0.6
1,315,866	-		Psyr_1161	0.30	+0.8
1,315,973	+		Psyr_1161	0.45	+1.0
1,315,973	+		Psyr_1161	0.45	+0.1
1,315,973	+		Psyr_1161	0.45	+2.6
1,315,973	+		Psyr_1161	0.45	+1.3
1,315,973	+		Psyr_1161	0.45	+0.2
1,315,974	-		Psyr_1161	0.45	-2.6
1,315,974	-		Psyr_1161	0.45	-0.4
1,315,974	-		Psyr_1161	0.45	-0.3
1,315,974	-		Psyr_1161	0.45	-0.1
1,315,974	-		Psyr_1161	0.45	+0.7
1,315,974	-		Psyr_1161	0.45	+0.6
1,315,977	+		Psyr_1161	0.46	-0.1
1,315,977	+		Psyr_1161	0.46	+1.0
1,315,977	+		Psyr_1161	0.46	-1.3
1,315,977	+		Psyr_1161	0.46	+1.2
1,315,977	+		Psyr_1161	0.46	-0.8
1,315,977	+		Psyr_1161	0.46	-0.6
1,315,977	+		Psyr_1161	0.46	-0.1
1,315,977	+		Psyr_1161	0.46	-1.2
1,315,977	+		Psyr_1161	0.46	-0.6
1,315,977	+		Psyr_1161	0.46	+0.6
1,315,977	+		Psyr_1161	0.46	-0.1
1,315,977	+		Psyr_1161	0.46	-0.2
1,315,977	+		Psyr_1161	0.46	+0.3
1,315,977	+		Psyr_1161	0.46	+0.0
1,315,977	+		Psyr_1161	0.46	-0.1
1,315,977	+		Psyr_1161	0.46	+1.0
1,315,978	-		Psyr_1161	0.46	-0.8
1,315,978	-		Psyr_1161	0.46	-0.7
1,315,978	-		Psyr_1161	0.46	-0.8
1,315,978	-		Psyr_1161	0.46	+1.6
1,315,978	-		Psyr_1161	0.46	-0.6
1,315,978	-		Psyr_1161	0.46	-0.2
1,315,978	-		Psyr_1161	0.46	+1.5
1,315,978	-		Psyr_1161	0.46	+0.6
1,315,978	-		Psyr_1161	0.46	+2.0
1,315,978	-		Psyr_1161	0.46	+1.0
1,316,021	+		Psyr_1161	0.52	+0.7
1,316,022	-		Psyr_1161	0.52	-0.2
1,316,022	-		Psyr_1161	0.52	-1.1
1,316,098	+		Psyr_1161	0.63	+0.1
1,316,098	+		Psyr_1161	0.63	+1.3
1,316,098	+		Psyr_1161	0.63	+0.2
1,316,099	-		Psyr_1161	0.64	-0.1
1,316,099	-		Psyr_1161	0.64	+1.3
1,316,168	-		Psyr_1161	0.74	+1.4
1,316,189	-		Psyr_1161	0.77	-0.2
1,316,272	+		Psyr_1161	0.89	+0.9
1,316,272	+		Psyr_1161	0.89	+1.0
1,316,272	+		Psyr_1161	0.89	+1.8
1,316,272	+		Psyr_1161	0.89	+0.8
1,316,273	-		Psyr_1161	0.89	-0.1
1,316,273	-		Psyr_1161	0.89	-0.4
1,316,640	+		Psyr_1162	0.74	-0.5
1,316,640	+		Psyr_1162	0.74	-0.6
1,316,640	+		Psyr_1162	0.74	-1.0
1,316,641	-		Psyr_1162	0.75	-2.3
1,316,641	-		Psyr_1162	0.75	+1.2
1,316,641	-		Psyr_1162	0.75	+0.7
1,316,641	-		Psyr_1162	0.75	+0.8
1,316,686	-		Psyr_1162	0.86	+0.6
1,316,858	+		Psyr_1163	0.17	-0.8
1,316,858	+		Psyr_1163	0.17	-1.4
1,316,859	-		Psyr_1163	0.18	-1.8
1,316,859	-		Psyr_1163	0.18	+0.7
1,316,859	-		Psyr_1163	0.18	+1.1
1,316,859	-		Psyr_1163	0.18	+3.3
1,317,269	-		Psyr_1163	0.78	-2.1