Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1054

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,191,051	+				-3.1
1,191,096	+				-2.9
1,191,097	-				+2.4
1,191,097	-				-0.4
1,191,185	-				+0.5
1,191,247	+				+0.0
1,191,247	+				+0.8
1,191,247	+				+1.1
1,191,248	-				-0.9
1,191,248	-				+1.5
1,191,248	-				-0.3
1,191,248	-				-1.5
1,191,248	-				-0.1
1,191,248	-				-0.4
1,191,248	-				-0.9
1,191,316	+		Psyr_1053	0.20	-1.0
1,191,317	-		Psyr_1053	0.20	+0.9
1,191,317	-		Psyr_1053	0.20	-1.7
1,191,317	-		Psyr_1053	0.20	+1.8
1,191,529	+		Psyr_1053	0.52	+0.5
1,191,529	+		Psyr_1053	0.52	-0.5
1,191,529	+		Psyr_1053	0.52	-0.4
1,191,529	+		Psyr_1053	0.52	+0.5
1,191,529	+		Psyr_1053	0.52	-3.1
1,191,529	+		Psyr_1053	0.52	+1.6
1,191,529	+		Psyr_1053	0.52	-2.6
1,191,529	+		Psyr_1053	0.52	-1.0
1,191,530	-		Psyr_1053	0.52	+1.1
1,191,530	-		Psyr_1053	0.52	+0.4
1,191,532	+		Psyr_1053	0.52	-0.3
1,191,532	+		Psyr_1053	0.52	-1.4
1,191,532	+		Psyr_1053	0.52	-2.6
1,191,532	+		Psyr_1053	0.52	-0.6
1,191,533	-		Psyr_1053	0.52	-1.1
1,191,586	+		Psyr_1053	0.60	+0.9
1,191,691	+		Psyr_1053	0.76	+0.5
1,191,691	+		Psyr_1053	0.76	-2.1
1,191,691	+		Psyr_1053	0.76	+0.1
1,191,692	-		Psyr_1053	0.76	-1.9
1,191,692	-		Psyr_1053	0.76	+0.0
1,191,692	-		Psyr_1053	0.76	+0.2
1,191,733	+		Psyr_1053	0.82	-0.1
1,191,836	+				-0.4
1,191,836	+				+0.7
1,192,063	+		Psyr_1054	0.17	-2.6
1,192,063	+		Psyr_1054	0.17	+1.1
1,192,064	-		Psyr_1054	0.17	+0.7
1,192,064	-		Psyr_1054	0.17	-0.7
1,192,064	-		Psyr_1054	0.17	+0.7
1,192,105	+		Psyr_1054	0.20	-0.1
1,192,105	+		Psyr_1054	0.20	+0.8
1,192,106	-		Psyr_1054	0.21	-1.7
1,192,160	+		Psyr_1054	0.25	+1.3
1,192,328	+		Psyr_1054	0.39	+0.2
1,192,328	+		Psyr_1054	0.39	-0.5
1,192,328	+		Psyr_1054	0.39	+0.7
1,192,328	+		Psyr_1054	0.39	-0.3
1,192,328	+		Psyr_1054	0.39	+1.3
1,192,329	-		Psyr_1054	0.40	-1.3
1,192,329	-		Psyr_1054	0.40	-1.3
1,192,346	-		Psyr_1054	0.41	-1.2
1,192,576	+		Psyr_1054	0.61	-0.2
1,192,707	-		Psyr_1054	0.72	-0.9
1,192,771	+		Psyr_1054	0.77	-2.5
1,192,771	+		Psyr_1054	0.77	-0.5
1,192,772	-		Psyr_1054	0.77	-0.5
1,193,014	+				+0.1
1,193,014	+				-1.9
1,193,015	-				+2.5
1,193,015	-				+1.7
1,193,015	-				+0.9
1,193,063	+				+1.3
1,193,063	+				-1.1
1,193,064	-				+1.2
1,193,204	+				-1.7
1,193,205	-				-0.3
1,193,214	+		Psyr_1055	0.11	-0.1
1,193,214	+		Psyr_1055	0.11	-1.5
1,193,215	-		Psyr_1055	0.11	+0.6
1,193,215	-		Psyr_1055	0.11	+0.2
1,193,324	+		Psyr_1055	0.18	-0.9
1,193,325	-		Psyr_1055	0.18	+1.5
1,193,325	-		Psyr_1055	0.18	-1.3
1,193,325	-		Psyr_1055	0.18	+0.7
1,193,360	+		Psyr_1055	0.20	+0.1
1,193,361	-		Psyr_1055	0.20	+0.2
1,193,361	-		Psyr_1055	0.20	-0.0
1,193,453	+		Psyr_1055	0.26	-0.7
1,193,453	+		Psyr_1055	0.26	+0.5
1,193,453	+		Psyr_1055	0.26	+0.9
1,193,453	+		Psyr_1055	0.26	-0.4
1,193,454	-		Psyr_1055	0.26	+0.1
1,193,454	-		Psyr_1055	0.26	+1.6
1,193,454	-		Psyr_1055	0.26	+0.3
1,193,454	-		Psyr_1055	0.26	-0.2
1,193,457	+		Psyr_1055	0.26	-0.3
1,193,457	+		Psyr_1055	0.26	-0.3
1,193,457	+		Psyr_1055	0.26	+2.1
1,193,458	-		Psyr_1055	0.26	-1.7
1,193,458	-		Psyr_1055	0.26	+1.8
1,193,458	-		Psyr_1055	0.26	-0.5
1,193,458	-		Psyr_1055	0.26	-1.2
1,193,458	-		Psyr_1055	0.26	-1.0
1,193,458	-		Psyr_1055	0.26	-0.6
1,193,540	-		Psyr_1055	0.31	-2.7
1,193,540	-		Psyr_1055	0.31	+1.1
1,193,552	+		Psyr_1055	0.32	-1.1
1,193,624	+		Psyr_1055	0.37	+1.1
1,193,624	+		Psyr_1055	0.37	-0.8
1,193,624	+		Psyr_1055	0.37	-0.9
1,193,624	+		Psyr_1055	0.37	-2.6
1,193,624	+		Psyr_1055	0.37	+1.0
1,193,624	+		Psyr_1055	0.37	-1.0
1,193,624	+		Psyr_1055	0.37	+0.9
1,193,624	+		Psyr_1055	0.37	+1.1
1,193,624	+		Psyr_1055	0.37	-0.8
1,193,625	-		Psyr_1055	0.37	+1.0
1,193,625	-		Psyr_1055	0.37	+1.5
1,193,625	-		Psyr_1055	0.37	-1.2
1,193,625	-		Psyr_1055	0.37	-0.9
1,193,625	-		Psyr_1055	0.37	-0.7
1,193,625	-		Psyr_1055	0.37	-0.3
1,193,625	-		Psyr_1055	0.37	+0.8
1,193,625	-		Psyr_1055	0.37	+0.8
1,193,625	-		Psyr_1055	0.37	+0.6
1,193,625	-		Psyr_1055	0.37	-1.1
1,193,726	+		Psyr_1055	0.43	+0.3
1,193,726	+		Psyr_1055	0.43	+0.4
1,193,726	+		Psyr_1055	0.43	+0.3
1,193,726	+		Psyr_1055	0.43	-0.3
1,193,726	+		Psyr_1055	0.43	-1.5
1,193,726	+		Psyr_1055	0.43	+0.7
1,193,726	+		Psyr_1055	0.43	-1.5
1,193,726	+		Psyr_1055	0.43	-1.7
1,193,726	+		Psyr_1055	0.43	+0.3
1,193,726	+		Psyr_1055	0.43	+0.0
1,193,726	+		Psyr_1055	0.43	+0.2
1,193,726	+		Psyr_1055	0.43	-1.5
1,193,727	-		Psyr_1055	0.43	-1.2
1,193,727	-		Psyr_1055	0.43	-1.3
1,193,727	-		Psyr_1055	0.43	+1.1
1,193,727	-		Psyr_1055	0.43	-0.7
1,193,733	-		Psyr_1055	0.44	-0.6
1,193,801	+		Psyr_1055	0.48	+0.5
1,193,801	+		Psyr_1055	0.48	-1.6
1,193,801	+		Psyr_1055	0.48	-0.4
1,193,801	+		Psyr_1055	0.48	-1.5
1,193,801	+		Psyr_1055	0.48	-1.6
1,193,801	+		Psyr_1055	0.48	-1.1
1,193,802	-		Psyr_1055	0.48	-2.3
1,193,802	-		Psyr_1055	0.48	-0.3
1,193,802	-		Psyr_1055	0.48	+0.4
1,193,802	-		Psyr_1055	0.48	-1.0
1,193,802	-		Psyr_1055	0.48	+1.2
1,193,802	-		Psyr_1055	0.48	-2.4
1,193,802	-		Psyr_1055	0.48	+0.5
1,193,802	-		Psyr_1055	0.48	-0.2
1,193,802	-		Psyr_1055	0.48	+0.7
1,193,802	-		Psyr_1055	0.48	+1.8
1,193,802	-		Psyr_1055	0.48	-0.4
1,193,888	+		Psyr_1055	0.54	-1.7
1,193,888	+		Psyr_1055	0.54	-0.3
1,193,888	+		Psyr_1055	0.54	+0.1
1,193,889	-		Psyr_1055	0.54	-0.7