Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0733 and Psyr_0734 are separated by 430 nucleotides Psyr_0734 and Psyr_0735 are separated by 363 nucleotides Psyr_0735 and Psyr_0736 overlap by 14 nucleotides
Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249
_0733
Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123
_0734
Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921
_0735
Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153
_0736
Position (kb) 839
840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 838.689 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.726 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.763 kb on - strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.964 kb on - strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.249 kb on + strand at 839.249 kb on + strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.293 kb on - strand at 839.293 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.339 kb on + strand at 839.339 kb on + strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.347 kb on + strand at 839.348 kb on - strand at 839.348 kb on - strand at 839.433 kb on - strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.444 kb on - strand at 839.486 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.542 kb on - strand at 839.599 kb on + strand at 839.992 kb on - strand, within Psyr_0734 at 839.997 kb on + strand, within Psyr_0734 at 839.998 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.253 kb on - strand at 840.266 kb on + strand at 840.267 kb on - strand at 840.267 kb on - strand at 840.274 kb on + strand at 840.284 kb on - strand at 840.333 kb on - strand at 840.351 kb on - strand at 840.351 kb on - strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.454 kb on + strand at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.892 kb on + strand at 840.938 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 838,689 + Psyr_0733 0.41 +0.7 838,689 + Psyr_0733 0.41 -2.4 838,690 - Psyr_0733 0.41 +0.8 838,690 - Psyr_0733 0.41 -0.3 838,690 - Psyr_0733 0.41 +0.8 838,690 - Psyr_0733 0.41 +0.4 838,690 - Psyr_0733 0.41 +0.1 838,690 - Psyr_0733 0.41 -2.9 838,690 - Psyr_0733 0.41 -0.7 838,699 + Psyr_0733 0.42 +1.8 838,699 + Psyr_0733 0.42 +0.1 838,699 + -1.9 838,699 + Psyr_0733 0.42 +0.0 838,699 + Psyr_0733 0.42 +0.1 838,699 + Psyr_0733 0.42 -1.2 838,700 - Psyr_0733 0.43 -0.1 838,700 - Psyr_0733 0.43 -1.4 838,700 - Psyr_0733 0.43 +0.8 838,700 - Psyr_0733 0.43 -1.2 838,726 - Psyr_0733 0.45 -0.9 838,751 - Psyr_0733 0.48 +0.6 838,751 - Psyr_0733 0.48 -0.7 838,751 - Psyr_0733 0.48 +0.3 838,763 - Psyr_0733 0.49 +1.3 838,830 + Psyr_0733 0.56 -2.8 838,830 + Psyr_0733 0.56 -2.4 838,939 + Psyr_0733 0.68 +0.3 838,939 + Psyr_0733 0.68 -0.0 838,940 - Psyr_0733 0.68 +0.1 838,940 - Psyr_0733 0.68 +0.3 838,940 - Psyr_0733 0.68 +1.0 838,940 - Psyr_0733 0.68 -1.9 838,964 - Psyr_0733 0.70 +0.7 839,005 + Psyr_0733 0.74 -0.3 839,005 + Psyr_0733 0.74 +0.4 839,005 + Psyr_0733 0.74 -0.2 839,005 + Psyr_0733 0.74 +0.3 839,006 - Psyr_0733 0.75 -1.7 839,006 - Psyr_0733 0.75 +0.8 839,077 + Psyr_0733 0.82 -0.4 839,077 + Psyr_0733 0.82 -0.3 839,077 + Psyr_0733 0.82 -1.0 839,077 + Psyr_0733 0.82 +0.2 839,077 + Psyr_0733 0.82 -0.4 839,077 + Psyr_0733 0.82 -1.9 839,077 + Psyr_0733 0.82 +0.7 839,077 + Psyr_0733 0.82 -1.7 839,249 + +2.1 839,249 + -1.9 839,250 - +1.2 839,250 - -1.0 839,250 - -0.9 839,250 - +0.4 839,250 - +1.0 839,250 - +0.5 839,252 - +0.3 839,252 - -0.2 839,252 - -1.0 839,252 - -0.3 839,252 - -2.2 839,252 - -1.6 839,252 - +2.1 839,252 - -0.4 839,252 - -1.0 839,252 - -0.9 839,252 - -1.4 839,252 - +0.2 839,252 - -1.0 839,252 - -0.1 839,252 - +0.8 839,291 - -1.9 839,291 - -0.3 839,291 - +1.4 839,291 - +0.4 839,291 - -0.3 839,291 - +0.7 839,291 - +0.4 839,291 - -0.1 839,291 - -1.6 839,291 - +1.4 839,293 - -0.9 839,293 - -0.6 839,319 + -1.7 839,319 + -0.0 839,319 + -0.6 839,319 + -1.2 839,319 + +0.0 839,319 + +0.4 839,319 + -0.1 839,319 + +0.4 839,319 + +0.7 839,319 + -0.9 839,319 + -1.8 839,319 + +0.8 839,319 + +2.0 839,339 + +0.2 839,339 + +0.7 839,340 - +0.4 839,340 - -0.8 839,340 - +0.4 839,341 + +0.3 839,341 + -0.7 839,341 + +0.2 839,341 + -3.4 839,341 + -1.2 839,341 + +0.8 839,341 + +1.8 839,341 + +0.8 839,341 + +0.7 839,342 - -0.7 839,342 - +0.8 839,342 - -2.0 839,342 - +2.3 839,347 + +0.4 839,348 - +1.1 839,348 - -1.8 839,433 - -0.1 839,439 + +0.6 839,439 + +1.0 839,439 + +1.1 839,439 + +0.0 839,444 - +1.1 839,486 + +0.9 839,541 + -0.4 839,541 + +1.0 839,541 + -1.0 839,542 - +0.5 839,599 + -0.6 839,992 - Psyr_0734 0.70 -1.7 839,997 + Psyr_0734 0.71 -2.0 839,998 - Psyr_0734 0.72 -1.2 840,012 - Psyr_0734 0.75 -1.7 840,012 - Psyr_0734 0.75 -2.7 840,012 - Psyr_0734 0.75 +0.3 840,012 - Psyr_0734 0.75 +0.2 840,012 - Psyr_0734 0.75 -0.7 840,252 + +0.8 840,252 + +0.9 840,252 + -0.1 840,252 + -1.7 840,253 - -0.7 840,266 + -1.2 840,267 - -1.1 840,267 - +1.8 840,274 + +0.5 840,284 - -0.9 840,333 - -2.3 840,351 - -2.3 840,351 - +0.8 840,452 + -1.5 840,452 + -1.2 840,452 + +0.1 840,452 + -0.6 840,452 + -0.0 840,454 + -1.2 840,829 - Psyr_0735 0.79 -0.2 840,829 - Psyr_0735 0.79 +0.4 840,829 - Psyr_0735 0.79 +0.1 840,829 - Psyr_0735 0.79 -0.5 840,892 + +0.7 840,938 - Psyr_0736 0.12 -1.8 840,957 - Psyr_0736 0.20 +1.2 840,957 - Psyr_0736 0.20 -0.2 840,957 - Psyr_0736 0.20 +2.1 840,957 - Psyr_0736 0.20 +2.6 840,957 - Psyr_0736 0.20 -0.1 840,957 - Psyr_0736 0.20 -2.2
Or see this region's nucleotide sequence