Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0442 and Psyr_0443 overlap by 1 nucleotides Psyr_0443 and Psyr_0444 are separated by 1 nucleotides Psyr_0444 and Psyr_0445 overlap by 8 nucleotides Psyr_0445 and Psyr_0446 overlap by 4 nucleotides
Psyr_0442: Psyr_0442 - Malonate decarboxylase, alpha subunit, at 479,613 to 481,289
_0442
Psyr_0443: Psyr_0443 - Triphosphoribosyl-dephospho-CoA synthase, at 481,289 to 482,164
_0443
Psyr_0444: Psyr_0444 - Malonate decarboxylase delta subunit, at 482,166 to 482,465
_0444
Psyr_0445: Psyr_0445 - malonate decarboxylase, beta subunit, at 482,458 to 483,309
_0445
Psyr_0446: Psyr_0446 - Malonate decarboxylase gamma subunit, at 483,306 to 484,106
_0446
Position (kb) 482
483 Strain fitness (log2 ratio) -2
-1
0
1 at 481.258 kb on - strand at 481.258 kb on - strand at 481.258 kb on - strand at 481.258 kb on - strand at 481.258 kb on - strand at 481.600 kb on + strand, within Psyr_0443 at 481.600 kb on + strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.603 kb on + strand, within Psyr_0443 at 481.604 kb on - strand, within Psyr_0443 at 481.604 kb on - strand, within Psyr_0443 at 481.853 kb on - strand, within Psyr_0443 at 481.853 kb on - strand, within Psyr_0443 at 481.916 kb on - strand, within Psyr_0443 at 481.998 kb on - strand, within Psyr_0443 at 482.423 kb on + strand, within Psyr_0444 at 482.971 kb on + strand, within Psyr_0445 at 482.971 kb on + strand, within Psyr_0445 at 482.972 kb on - strand, within Psyr_0445 at 483.049 kb on + strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.289 kb on + strand at 483.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 481,258 - +1.3 481,258 - +0.8 481,258 - -0.6 481,258 - +0.4 481,258 - +0.2 481,600 + Psyr_0443 0.36 +0.1 481,600 + Psyr_0443 0.36 +0.6 481,601 - Psyr_0443 0.36 +1.0 481,601 - Psyr_0443 0.36 -2.1 481,601 - Psyr_0443 0.36 -0.9 481,603 + Psyr_0443 0.36 +1.1 481,604 - Psyr_0443 0.36 -0.3 481,604 - Psyr_0443 0.36 -1.5 481,853 - Psyr_0443 0.64 +0.2 481,853 - Psyr_0443 0.64 -0.5 481,916 - Psyr_0443 0.72 +0.9 481,998 - Psyr_0443 0.81 +0.7 482,423 + Psyr_0444 0.86 -1.1 482,971 + Psyr_0445 0.60 +0.3 482,971 + Psyr_0445 0.60 +0.2 482,972 - Psyr_0445 0.60 +0.0 483,049 + Psyr_0445 0.69 -0.3 483,050 - Psyr_0445 0.69 -1.2 483,050 - Psyr_0445 0.69 -2.7 483,050 - Psyr_0445 0.69 +0.3 483,289 + -0.3 483,290 - -1.4
Or see this region's nucleotide sequence