Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0281 and Psyr_0282 overlap by 1 nucleotides Psyr_0282 and Psyr_0283 are separated by 50 nucleotides Psyr_0283 and Psyr_0284 are separated by 245 nucleotides Psyr_0284 and Psyr_0285 are separated by 69 nucleotides
Psyr_0281: Psyr_0281 - ABC transporter, at 299,935 to 300,942
_0281
Psyr_0282: Psyr_0282 - Binding-protein-dependent transport systems inner membrane component, at 300,942 to 301,616
_0282
Psyr_0283: Psyr_0283 - NLPA lipoprotein, at 301,667 to 302,440
_0283
Psyr_0284: Psyr_0284 - Electron transport protein SCO1/SenC, at 302,686 to 303,318
_0284
Psyr_0285: Psyr_0285 - Cytochrome c oxidase assembly protein CtaG/Cox11, at 303,388 to 303,879
_0285
Position (kb) 301
302
303 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.822 kb on + strand, within Psyr_0281 at 300.924 kb on + strand at 300.924 kb on + strand at 300.924 kb on + strand at 300.925 kb on - strand at 300.925 kb on - strand at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.120 kb on - strand, within Psyr_0282 at 301.120 kb on - strand, within Psyr_0282 at 301.543 kb on + strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.631 kb on - strand at 301.678 kb on - strand at 301.678 kb on - strand at 301.678 kb on - strand at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.871 kb on - strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.411 kb on + strand at 302.411 kb on + strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.612 kb on - strand at 302.612 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.752 kb on - strand, within Psyr_0284 at 302.813 kb on + strand, within Psyr_0284 at 302.813 kb on + strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.922 kb on - strand, within Psyr_0284 at 302.922 kb on - strand, within Psyr_0284 at 302.931 kb on - strand, within Psyr_0284 at 302.983 kb on + strand, within Psyr_0284 at 303.333 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.368 kb on - strand at 303.368 kb on - strand at 303.368 kb on - strand at 303.383 kb on + strand at 303.384 kb on - strand at 303.384 kb on - strand at 303.389 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.415 kb on - strand at 303.415 kb on - strand at 303.415 kb on - strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.417 kb on - strand at 303.417 kb on - strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 300,758 - Psyr_0281 0.82 -0.7 300,758 - Psyr_0281 0.82 +0.2 300,758 - Psyr_0281 0.82 +1.1 300,758 - Psyr_0281 0.82 +1.1 300,822 + Psyr_0281 0.88 +0.4 300,924 + +0.3 300,924 + -0.1 300,924 + -0.4 300,925 - -1.4 300,925 - -1.1 301,119 + Psyr_0282 0.26 -3.9 301,119 + Psyr_0282 0.26 -0.3 301,119 + Psyr_0282 0.26 +0.1 301,119 + Psyr_0282 0.26 +0.9 301,119 + Psyr_0282 0.26 +0.1 301,120 - Psyr_0282 0.26 -1.9 301,120 - Psyr_0282 0.26 -0.4 301,543 + Psyr_0282 0.89 +0.3 301,544 - Psyr_0282 0.89 -0.2 301,544 - Psyr_0282 0.89 +0.4 301,544 - Psyr_0282 0.89 -0.5 301,544 - Psyr_0282 0.89 +0.5 301,631 - +0.1 301,678 - +0.5 301,678 - +0.8 301,678 - -1.0 301,835 + Psyr_0283 0.22 +0.4 301,835 + Psyr_0283 0.22 -3.2 301,835 + Psyr_0283 0.22 -0.9 301,835 + Psyr_0283 0.22 -0.6 301,836 - Psyr_0283 0.22 -2.6 301,836 - Psyr_0283 0.22 +0.6 301,836 - Psyr_0283 0.22 +0.6 301,836 - Psyr_0283 0.22 -2.0 301,836 - Psyr_0283 0.22 +0.5 301,871 - Psyr_0283 0.26 -0.4 302,237 + Psyr_0283 0.74 +0.6 302,237 + Psyr_0283 0.74 -2.4 302,237 + Psyr_0283 0.74 -1.6 302,238 - Psyr_0283 0.74 -0.3 302,238 - Psyr_0283 0.74 +1.6 302,238 - Psyr_0283 0.74 -0.3 302,238 - Psyr_0283 0.74 -0.3 302,238 - Psyr_0283 0.74 -0.2 302,411 + +0.1 302,411 + +0.6 302,412 - +0.4 302,412 - -0.0 302,412 - +0.8 302,412 - -0.6 302,546 + +0.9 302,546 + -3.8 302,546 + -0.0 302,546 + +0.7 302,546 + -0.6 302,546 + -1.6 302,546 + -0.1 302,546 + +1.1 302,546 + +3.4 302,546 + -0.2 302,546 + -0.6 302,546 + +1.3 302,546 + +1.2 302,546 + -1.0 302,546 + +0.9 302,546 + -0.9 302,546 + +0.4 302,546 + -0.0 302,546 + +0.2 302,546 + +1.1 302,547 - +0.4 302,547 - +1.7 302,547 - +0.1 302,547 - -1.2 302,547 - -0.6 302,547 - +0.1 302,547 - -0.7 302,547 - -0.7 302,547 - -0.1 302,547 - -2.0 302,547 - -1.6 302,550 + +0.3 302,550 + -0.0 302,550 + +0.3 302,550 + +0.8 302,550 + -1.0 302,550 + -2.5 302,550 + +0.3 302,550 + -1.5 302,550 + -0.8 302,550 + -0.9 302,550 + -1.1 302,550 + +3.4 302,550 + -1.9 302,551 - -1.6 302,551 - +0.6 302,551 - -0.1 302,551 - +0.3 302,551 - +2.0 302,551 - -0.4 302,551 - +0.3 302,551 - +0.6 302,551 - +0.6 302,551 - +0.6 302,551 - -2.4 302,552 + +1.3 302,552 + +0.2 302,552 + +0.7 302,552 + +1.4 302,552 + -0.7 302,552 + -0.8 302,552 + +1.2 302,552 + +0.5 302,552 + -2.2 302,552 + -1.5 302,552 + +0.3 302,552 + +0.6 302,552 + +0.8 302,552 + +1.4 302,552 + -0.8 302,552 + -0.4 302,552 + +1.0 302,552 + +0.3 302,552 + +0.8 302,552 + -0.2 302,552 + +1.2 302,552 + +0.6 302,552 + -0.0 302,552 + +2.0 302,552 + -0.5 302,552 + +0.2 302,552 + +0.5 302,552 + -1.6 302,552 + +0.7 302,552 + +0.5 302,552 + +0.2 302,552 + -0.7 302,552 + +0.5 302,552 + -0.5 302,552 + +0.0 302,552 + +0.6 302,552 + +0.1 302,552 + +0.9 302,552 + +0.8 302,552 + +0.6 302,552 + -0.5 302,552 + +1.1 302,552 + +1.8 302,552 + +1.0 302,552 + -1.0 302,552 + +0.1 302,552 + +0.6 302,552 + +0.3 302,552 + +0.9 302,552 + -0.8 302,552 + +1.1 302,553 - -0.8 302,553 - +0.4 302,553 - -0.1 302,553 - -0.1 302,553 - +0.8 302,553 - -0.6 302,553 - -1.0 302,553 - +0.9 302,553 - -1.1 302,553 - +0.5 302,553 - -1.8 302,553 - -0.3 302,553 - +1.7 302,553 - +0.3 302,553 - +1.1 302,553 - +0.5 302,553 - -2.2 302,553 - +1.0 302,553 - +0.1 302,553 - -0.8 302,553 - +0.4 302,553 - +0.5 302,553 - +0.2 302,553 - -0.7 302,553 - -0.6 302,553 - -2.4 302,553 - -0.9 302,553 - +0.2 302,553 - -0.3 302,553 - -0.7 302,553 - -0.2 302,553 - -0.8 302,553 - +0.5 302,553 - +0.7 302,553 - +1.6 302,553 - -2.2 302,553 - -0.1 302,553 - -1.8 302,553 - -0.6 302,553 - -0.2 302,553 - -1.8 302,553 - -1.0 302,553 - -0.1 302,553 - -0.8 302,553 - +0.7 302,553 - +0.6 302,553 - +0.8 302,612 - +0.1 302,612 - -0.5 302,681 - -0.5 302,681 - +1.4 302,681 - +0.3 302,681 - -0.7 302,752 - Psyr_0284 0.10 +2.2 302,813 + Psyr_0284 0.20 +0.5 302,813 + Psyr_0284 0.20 +0.2 302,814 - Psyr_0284 0.20 +0.8 302,814 - Psyr_0284 0.20 -0.2 302,814 - Psyr_0284 0.20 -1.0 302,814 - Psyr_0284 0.20 +1.3 302,814 - Psyr_0284 0.20 -0.7 302,814 - Psyr_0284 0.20 -1.0 302,906 + Psyr_0284 0.35 -1.3 302,906 + Psyr_0284 0.35 -0.7 302,906 + Psyr_0284 0.35 +0.4 302,907 - Psyr_0284 0.35 -2.3 302,907 - Psyr_0284 0.35 -2.6 302,922 - Psyr_0284 0.37 +1.0 302,922 - Psyr_0284 0.37 -0.1 302,931 - Psyr_0284 0.39 -1.2 302,983 + Psyr_0284 0.47 -1.4 303,333 + +0.4 303,365 + -0.2 303,365 + +0.4 303,365 + +1.4 303,365 + +0.3 303,365 + -0.4 303,365 + -2.9 303,365 + +0.3 303,365 + -0.0 303,365 + -3.0 303,365 + -2.4 303,365 + -1.1 303,365 + +2.1 303,365 + -1.2 303,365 + -1.6 303,365 + -0.5 303,366 - +0.6 303,366 - -0.6 303,366 - +0.5 303,366 - -2.0 303,366 - -1.9 303,366 - +1.3 303,366 - +0.9 303,366 - -1.3 303,366 - -1.4 303,367 + +1.3 303,367 + +0.0 303,367 + +0.7 303,367 + -0.3 303,368 - +0.9 303,368 - +0.0 303,368 - +1.1 303,383 + +2.0 303,384 - +0.7 303,384 - +0.4 303,389 + +1.7 303,414 + +0.0 303,414 + -0.8 303,414 + +1.5 303,415 - +0.0 303,415 - +0.1 303,415 - -0.6 303,416 + +0.4 303,416 + -0.5 303,416 + -0.6 303,416 + +0.9 303,416 + -0.6 303,417 - -1.2 303,417 - -0.7 303,436 + +0.3 303,436 + +1.4 303,436 + +0.8 303,436 + -0.4 303,437 - -1.3 303,437 - +0.1 303,437 - -1.1
Or see this region's nucleotide sequence