Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_853

Experiment: sodium bromide 0.0125 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_852 and Pf6N2E2_853 are separated by 384 nucleotidesPf6N2E2_853 and Pf6N2E2_854 are separated by 427 nucleotides Pf6N2E2_852 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 996,446 to 998,728 _852 Pf6N2E2_853 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 999,113 to 999,745 _853 Pf6N2E2_854 - Xylose isomerase domain protein TIM barrel, at 1,000,173 to 1,000,982 _854 Position (kb) 999 1000Strain fitness (log2 ratio) -2 -1 0 1 2at 998.192 kb on + strand, within Pf6N2E2_852at 998.197 kb on - strand, within Pf6N2E2_852at 998.312 kb on + strand, within Pf6N2E2_852at 998.312 kb on + strand, within Pf6N2E2_852at 998.313 kb on - strand, within Pf6N2E2_852at 998.313 kb on - strand, within Pf6N2E2_852at 998.315 kb on - strand, within Pf6N2E2_852at 998.315 kb on - strand, within Pf6N2E2_852at 998.315 kb on - strand, within Pf6N2E2_852at 998.441 kb on + strand, within Pf6N2E2_852at 998.441 kb on + strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.492 kb on + strand, within Pf6N2E2_852at 998.492 kb on + strand, within Pf6N2E2_852at 998.492 kb on + strand, within Pf6N2E2_852at 998.812 kb on + strandat 998.813 kb on - strandat 998.840 kb on + strandat 998.846 kb on + strandat 998.959 kb on + strandat 998.960 kb on - strandat 998.971 kb on - strandat 998.971 kb on - strandat 999.014 kb on + strandat 999.014 kb on + strandat 999.015 kb on - strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.022 kb on - strandat 999.022 kb on - strandat 999.022 kb on - strandat 999.041 kb on + strandat 999.042 kb on - strandat 999.042 kb on - strandat 999.100 kb on - strandat 999.114 kb on + strandat 999.115 kb on - strandat 999.115 kb on - strandat 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strandat 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.315 kb on + strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.488 kb on - strand, within Pf6N2E2_853at 999.488 kb on - strand, within Pf6N2E2_853at 999.801 kb on - strandat 999.851 kb on - strandat 999.851 kb on - strandat 999.919 kb on + strandat 999.919 kb on + strandat 999.920 kb on - strandat 999.920 kb on - strandat 999.920 kb on - strandat 999.920 kb on - strandat 999.922 kb on - strandat 999.922 kb on - strandat 999.925 kb on + strandat 999.925 kb on + strandat 999.926 kb on - strandat 999.926 kb on - strandat 999.926 kb on - strandat 999.951 kb on - strandat 1000.029 kb on + strandat 1000.050 kb on + strandat 1000.050 kb on + strandat 1000.050 kb on + strandat 1000.051 kb on - strandat 1000.051 kb on - strandat 1000.051 kb on - strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.106 kb on + strandat 1000.117 kb on + strandat 1000.120 kb on + strandat 1000.195 kb on - strandat 1000.344 kb on + strand, within Pf6N2E2_854at 1000.412 kb on + strand, within Pf6N2E2_854at 1000.472 kb on + strand, within Pf6N2E2_854at 1000.472 kb on + strand, within Pf6N2E2_854at 1000.540 kb on - strand, within Pf6N2E2_854at 1000.551 kb on + strand, within Pf6N2E2_854at 1000.551 kb on + strand, within Pf6N2E2_854at 1000.603 kb on + strand, within Pf6N2E2_854at 1000.604 kb on - strand, within Pf6N2E2_854at 1000.624 kb on - strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.664 kb on - strand, within Pf6N2E2_854at 1000.664 kb on - strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.720 kb on - strand, within Pf6N2E2_854at 1000.720 kb on - strand, within Pf6N2E2_854

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M
remove
998,192 + Pf6N2E2_852 0.76 -0.8
998,197 - Pf6N2E2_852 0.77 +0.9
998,312 + Pf6N2E2_852 0.82 +0.4
998,312 + Pf6N2E2_852 0.82 -0.6
998,313 - Pf6N2E2_852 0.82 -0.1
998,313 - Pf6N2E2_852 0.82 +0.4
998,315 - Pf6N2E2_852 0.82 -0.4
998,315 - Pf6N2E2_852 0.82 +1.4
998,315 - Pf6N2E2_852 0.82 -0.4
998,441 + Pf6N2E2_852 0.87 +0.1
998,441 + Pf6N2E2_852 0.87 -0.2
998,442 - Pf6N2E2_852 0.87 -1.3
998,442 - Pf6N2E2_852 0.87 +0.7
998,442 - Pf6N2E2_852 0.87 -0.4
998,442 - Pf6N2E2_852 0.87 +1.0
998,492 + Pf6N2E2_852 0.90 -0.1
998,492 + Pf6N2E2_852 0.90 -0.1
998,492 + Pf6N2E2_852 0.90 +0.4
998,812 + -0.1
998,813 - -0.2
998,840 + -0.2
998,846 + -0.3
998,959 + +0.1
998,960 - +1.4
998,971 - +0.1
998,971 - +0.6
999,014 + -0.4
999,014 + +0.4
999,015 - +0.4
999,021 + -0.1
999,021 + +0.5
999,021 + -0.3
999,021 + +0.5
999,021 + -0.7
999,022 - -0.1
999,022 - +0.2
999,022 - -0.3
999,041 + +1.9
999,042 - +0.5
999,042 - +0.6
999,100 - +1.9
999,114 + +0.7
999,115 - +2.2
999,115 - -0.2
999,182 + Pf6N2E2_853 0.11 +0.5
999,182 + Pf6N2E2_853 0.11 +0.6
999,182 + Pf6N2E2_853 0.11 +0.9
999,182 + Pf6N2E2_853 0.11 +0.0
999,182 + Pf6N2E2_853 0.11 -0.2
999,182 + Pf6N2E2_853 0.11 +0.8
999,182 + Pf6N2E2_853 0.11 +1.9
999,182 + Pf6N2E2_853 0.11 +0.4
999,182 + Pf6N2E2_853 0.11 -1.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 +0.2
999,183 - Pf6N2E2_853 0.11 +0.7
999,183 - Pf6N2E2_853 0.11 -0.5
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 -0.5
999,183 - Pf6N2E2_853 0.11 -1.9
999,183 - Pf6N2E2_853 0.11 +0.7
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.4
999,183 - Pf6N2E2_853 0.11 +0.5
999,183 - +1.4
999,183 - Pf6N2E2_853 0.11 -0.4
999,183 - Pf6N2E2_853 0.11 +0.6
999,183 - Pf6N2E2_853 0.11 -0.4
999,183 - Pf6N2E2_853 0.11 +0.7
999,183 - Pf6N2E2_853 0.11 -0.4
999,183 - Pf6N2E2_853 0.11 -0.3
999,183 - Pf6N2E2_853 0.11 +0.2
999,183 - Pf6N2E2_853 0.11 +0.7
999,183 - Pf6N2E2_853 0.11 -0.2
999,183 - Pf6N2E2_853 0.11 -0.4
999,183 - Pf6N2E2_853 0.11 -1.9
999,183 - Pf6N2E2_853 0.11 +1.4
999,183 - Pf6N2E2_853 0.11 +0.8
999,183 - Pf6N2E2_853 0.11 +0.5
999,183 - Pf6N2E2_853 0.11 -0.2
999,183 - Pf6N2E2_853 0.11 +0.1
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.7
999,183 - Pf6N2E2_853 0.11 +0.2
999,183 - Pf6N2E2_853 0.11 -0.0
999,183 - Pf6N2E2_853 0.11 +0.9
999,183 - Pf6N2E2_853 0.11 +0.5
999,183 - Pf6N2E2_853 0.11 -1.0
999,184 + Pf6N2E2_853 0.11 -0.4
999,184 + Pf6N2E2_853 0.11 +1.0
999,184 + Pf6N2E2_853 0.11 +0.8
999,184 + Pf6N2E2_853 0.11 +0.4
999,184 + Pf6N2E2_853 0.11 +0.9
999,185 - Pf6N2E2_853 0.11 +0.4
999,185 - Pf6N2E2_853 0.11 -0.1
999,185 - Pf6N2E2_853 0.11 -0.4
999,185 - Pf6N2E2_853 0.11 +1.8
999,185 - Pf6N2E2_853 0.11 +0.1
999,185 - Pf6N2E2_853 0.11 -0.2
999,185 - Pf6N2E2_853 0.11 -0.2
999,185 - Pf6N2E2_853 0.11 +0.6
999,201 + Pf6N2E2_853 0.14 -0.8
999,201 + Pf6N2E2_853 0.14 +0.5
999,201 + Pf6N2E2_853 0.14 -1.2
999,315 + Pf6N2E2_853 0.32 -0.4
999,316 - Pf6N2E2_853 0.32 +0.3
999,316 - Pf6N2E2_853 0.32 +0.3
999,316 - Pf6N2E2_853 0.32 +0.4
999,488 - Pf6N2E2_853 0.59 +0.9
999,488 - Pf6N2E2_853 0.59 +0.0
999,801 - +0.3
999,851 - +0.9
999,851 - -0.8
999,919 + +0.7
999,919 + -1.0
999,920 - -0.6
999,920 - +1.0
999,920 - +1.2
999,920 - +0.2
999,922 - -0.0
999,922 - +0.7
999,925 + -2.6
999,925 + +1.9
999,926 - +0.2
999,926 - +1.4
999,926 - +0.6
999,951 - -0.5
1,000,029 + +0.6
1,000,050 + +1.1
1,000,050 + -0.4
1,000,050 + -0.3
1,000,051 - +0.3
1,000,051 - -0.2
1,000,051 - +0.4
1,000,052 + -0.4
1,000,052 + +0.2
1,000,052 + -1.1
1,000,052 + +2.0
1,000,052 + +0.1
1,000,053 - -0.8
1,000,053 - +0.6
1,000,053 - -0.0
1,000,053 - -1.0
1,000,053 - -0.3
1,000,053 - +0.3
1,000,053 - -0.4
1,000,106 + +0.4
1,000,117 + -2.5
1,000,120 + -1.4
1,000,195 - +0.0
1,000,344 + Pf6N2E2_854 0.21 +0.2
1,000,412 + Pf6N2E2_854 0.30 +0.1
1,000,472 + Pf6N2E2_854 0.37 +0.5
1,000,472 + Pf6N2E2_854 0.37 -0.0
1,000,540 - Pf6N2E2_854 0.45 -1.2
1,000,551 + Pf6N2E2_854 0.47 +0.8
1,000,551 + Pf6N2E2_854 0.47 -0.3
1,000,603 + Pf6N2E2_854 0.53 +0.2
1,000,604 - Pf6N2E2_854 0.53 +0.1
1,000,624 - Pf6N2E2_854 0.56 +1.6
1,000,663 + Pf6N2E2_854 0.60 +0.5
1,000,663 + Pf6N2E2_854 0.60 +0.9
1,000,663 + Pf6N2E2_854 0.60 -1.2
1,000,663 + Pf6N2E2_854 0.60 +1.0
1,000,663 + Pf6N2E2_854 0.60 -0.3
1,000,663 + Pf6N2E2_854 0.60 -0.7
1,000,664 - Pf6N2E2_854 0.61 -0.8
1,000,664 - Pf6N2E2_854 0.61 +0.6
1,000,719 + Pf6N2E2_854 0.67 +0.5
1,000,719 + Pf6N2E2_854 0.67 -0.9
1,000,719 + Pf6N2E2_854 0.67 +0.5
1,000,719 + Pf6N2E2_854 0.67 -0.8
1,000,719 + Pf6N2E2_854 0.67 +0.3
1,000,719 + Pf6N2E2_854 0.67 +0.3
1,000,720 - Pf6N2E2_854 0.68 -1.8
1,000,720 - Pf6N2E2_854 0.68 -0.2

Or see this region's nucleotide sequence