Experiment: sodium bromide 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_658 and Pf6N2E2_659 overlap by 4 nucleotides Pf6N2E2_659 and Pf6N2E2_660 are separated by 223 nucleotides Pf6N2E2_660 and Pf6N2E2_661 are separated by 168 nucleotides
Pf6N2E2_658 - sensor histidine kinase, at 762,265 to 763,575
_658
Pf6N2E2_659 - Transcriptional regulatory protein ompR, at 763,572 to 764,312
_659
Pf6N2E2_660 - hypothetical protein, at 764,536 to 764,799
_660
Pf6N2E2_661 - DipZ protein, at 764,968 to 766,179
_661
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 762.737 kb on + strand, within Pf6N2E2_658 at 762.997 kb on - strand, within Pf6N2E2_658 at 763.144 kb on + strand, within Pf6N2E2_658 at 763.145 kb on - strand, within Pf6N2E2_658 at 763.145 kb on - strand, within Pf6N2E2_658 at 763.235 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.335 kb on - strand, within Pf6N2E2_658 at 763.461 kb on - strand at 763.469 kb on + strand at 763.472 kb on + strand at 763.567 kb on + strand at 763.568 kb on - strand at 763.616 kb on - strand at 763.616 kb on - strand at 763.642 kb on + strand at 764.006 kb on - strand, within Pf6N2E2_659 at 764.006 kb on - strand, within Pf6N2E2_659 at 764.074 kb on - strand, within Pf6N2E2_659 at 764.246 kb on - strand at 764.286 kb on + strand at 764.287 kb on - strand at 764.287 kb on - strand at 764.349 kb on + strand at 764.384 kb on + strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.394 kb on + strand at 764.395 kb on - strand at 764.510 kb on + strand at 764.511 kb on - strand at 764.554 kb on + strand at 764.555 kb on - strand at 764.632 kb on + strand, within Pf6N2E2_660 at 764.632 kb on + strand, within Pf6N2E2_660 at 764.633 kb on - strand, within Pf6N2E2_660 at 764.725 kb on + strand, within Pf6N2E2_660 at 764.726 kb on - strand, within Pf6N2E2_660 at 764.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M remove 762,737 + Pf6N2E2_658 0.36 -0.7 762,997 - Pf6N2E2_658 0.56 +0.5 763,144 + Pf6N2E2_658 0.67 +1.2 763,145 - Pf6N2E2_658 0.67 -0.5 763,145 - Pf6N2E2_658 0.67 -0.1 763,235 + Pf6N2E2_658 0.74 -0.3 763,328 + Pf6N2E2_658 0.81 -1.2 763,328 + Pf6N2E2_658 0.81 +1.2 763,328 + Pf6N2E2_658 0.81 +0.5 763,328 + Pf6N2E2_658 0.81 -0.6 763,328 + Pf6N2E2_658 0.81 -0.9 763,328 + Pf6N2E2_658 0.81 +1.0 763,329 - Pf6N2E2_658 0.81 +0.3 763,329 - Pf6N2E2_658 0.81 +0.4 763,329 - Pf6N2E2_658 0.81 -0.6 763,329 - Pf6N2E2_658 0.81 +0.3 763,329 - Pf6N2E2_658 0.81 +0.1 763,329 - Pf6N2E2_658 0.81 +0.7 763,332 + Pf6N2E2_658 0.81 +0.4 763,332 + Pf6N2E2_658 0.81 +0.0 763,332 + Pf6N2E2_658 0.81 +0.8 763,332 + Pf6N2E2_658 0.81 -0.0 763,332 + Pf6N2E2_658 0.81 +1.2 763,332 + Pf6N2E2_658 0.81 +0.3 763,332 + Pf6N2E2_658 0.81 +0.2 763,333 - Pf6N2E2_658 0.81 +0.7 763,333 - Pf6N2E2_658 0.81 +0.1 763,333 - Pf6N2E2_658 0.81 +0.2 763,333 - Pf6N2E2_658 0.81 +0.3 763,333 - Pf6N2E2_658 0.81 +0.1 763,333 - Pf6N2E2_658 0.81 -0.2 763,333 - Pf6N2E2_658 0.81 +3.0 763,333 - Pf6N2E2_658 0.81 +0.1 763,334 + Pf6N2E2_658 0.82 -0.6 763,334 + Pf6N2E2_658 0.82 -0.1 763,334 + Pf6N2E2_658 0.82 -0.3 763,334 + Pf6N2E2_658 0.82 -1.8 763,334 + Pf6N2E2_658 0.82 +0.7 763,334 + Pf6N2E2_658 0.82 -1.9 763,334 + Pf6N2E2_658 0.82 +0.1 763,334 + Pf6N2E2_658 0.82 -0.1 763,334 + Pf6N2E2_658 0.82 +0.9 763,335 - Pf6N2E2_658 0.82 +0.1 763,461 - -0.1 763,469 + -0.4 763,472 + +0.7 763,567 + -0.2 763,568 - -2.9 763,616 - +1.1 763,616 - +0.3 763,642 + -0.4 764,006 - Pf6N2E2_659 0.59 -1.4 764,006 - Pf6N2E2_659 0.59 -0.0 764,074 - Pf6N2E2_659 0.68 -0.5 764,246 - -1.9 764,286 + -1.4 764,287 - +1.5 764,287 - +0.3 764,349 + -0.1 764,384 + +0.4 764,385 - -0.9 764,385 - -1.3 764,385 - -0.4 764,385 - +0.4 764,394 + +0.8 764,395 - +0.6 764,510 + +0.3 764,511 - -0.1 764,554 + -0.2 764,555 - +0.5 764,632 + Pf6N2E2_660 0.36 -0.1 764,632 + Pf6N2E2_660 0.36 +0.5 764,633 - Pf6N2E2_660 0.37 +0.5 764,725 + Pf6N2E2_660 0.72 -0.3 764,726 - Pf6N2E2_660 0.72 +0.3 764,938 + -0.4
Or see this region's nucleotide sequence