Experiment: sodium bromide 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5757 and Pf6N2E2_5758 are separated by 10 nucleotides Pf6N2E2_5758 and Pf6N2E2_5759 are separated by 80 nucleotides Pf6N2E2_5759 and Pf6N2E2_5760 are separated by 150 nucleotides
Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595
_5757
Pf6N2E2_5758 - FIG00957314: hypothetical protein, at 6,570,606 to 6,570,857
_5758
Pf6N2E2_5759 - DNA recombination protein RmuC, at 6,570,938 to 6,572,431
_5759
Pf6N2E2_5760 - Sensory box histidine kinase/response regulator, at 6,572,582 to 6,576,052
_5760
Position (kb)
6570
6571
6572
6573 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6569.938 kb on - strand at 6570.089 kb on + strand at 6570.089 kb on + strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.216 kb on + strand at 6570.216 kb on + strand at 6570.217 kb on - strand at 6570.446 kb on + strand, within Pf6N2E2_5757 at 6570.496 kb on + strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.534 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.600 kb on - strand at 6570.651 kb on - strand, within Pf6N2E2_5758 at 6570.682 kb on + strand, within Pf6N2E2_5758 at 6570.911 kb on - strand at 6570.911 kb on - strand at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.652 kb on - strand, within Pf6N2E2_5759 at 6571.652 kb on - strand, within Pf6N2E2_5759 at 6571.715 kb on + strand, within Pf6N2E2_5759 at 6571.778 kb on + strand, within Pf6N2E2_5759 at 6571.779 kb on - strand, within Pf6N2E2_5759 at 6571.832 kb on + strand, within Pf6N2E2_5759 at 6571.832 kb on + strand, within Pf6N2E2_5759 at 6571.833 kb on - strand, within Pf6N2E2_5759 at 6571.833 kb on - strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.937 kb on + strand, within Pf6N2E2_5759 at 6571.938 kb on - strand, within Pf6N2E2_5759 at 6572.178 kb on - strand, within Pf6N2E2_5759 at 6572.178 kb on - strand, within Pf6N2E2_5759 at 6572.178 kb on - strand, within Pf6N2E2_5759 at 6572.249 kb on + strand, within Pf6N2E2_5759 at 6572.250 kb on - strand, within Pf6N2E2_5759 at 6572.415 kb on + strand at 6572.415 kb on + strand at 6572.441 kb on + strand at 6572.442 kb on - strand at 6572.583 kb on + strand at 6572.583 kb on + strand at 6572.583 kb on + strand at 6572.584 kb on - strand at 6572.584 kb on - strand at 6572.584 kb on - strand at 6572.647 kb on - strand at 6572.647 kb on - strand at 6572.954 kb on + strand, within Pf6N2E2_5760 at 6572.954 kb on + strand, within Pf6N2E2_5760 at 6572.955 kb on - strand, within Pf6N2E2_5760 at 6573.068 kb on - strand, within Pf6N2E2_5760 at 6573.068 kb on - strand, within Pf6N2E2_5760
Per-strain Table
Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M remove 6,569,938 - -0.1 6,570,089 + +0.5 6,570,089 + -0.1 6,570,090 - +0.1 6,570,090 - -1.9 6,570,090 - +0.5 6,570,090 - +0.0 6,570,090 - +0.5 6,570,090 - -1.0 6,570,090 - -0.7 6,570,090 - -0.1 6,570,198 + +0.8 6,570,198 + -0.8 6,570,198 + +0.4 6,570,198 + +0.8 6,570,198 + +1.8 6,570,199 - -0.8 6,570,199 - +1.5 6,570,199 - +0.4 6,570,199 - -0.0 6,570,199 - -0.2 6,570,199 - -0.1 6,570,199 - +0.9 6,570,199 - +0.0 6,570,199 - +0.3 6,570,216 + -0.2 6,570,216 + +1.3 6,570,217 - +0.9 6,570,446 + Pf6N2E2_5757 0.21 +0.1 6,570,496 + Pf6N2E2_5757 0.47 -0.4 6,570,497 - Pf6N2E2_5757 0.48 -0.4 6,570,497 - Pf6N2E2_5757 0.48 +0.3 6,570,519 - Pf6N2E2_5757 0.59 +2.4 6,570,519 - Pf6N2E2_5757 0.59 -0.4 6,570,534 - Pf6N2E2_5757 0.67 +0.4 6,570,564 - Pf6N2E2_5757 0.83 +0.5 6,570,564 - Pf6N2E2_5757 0.83 +1.1 6,570,600 - +1.2 6,570,651 - Pf6N2E2_5758 0.18 +1.6 6,570,682 + Pf6N2E2_5758 0.30 +0.6 6,570,911 - +0.6 6,570,911 - -2.5 6,571,523 + Pf6N2E2_5759 0.39 -0.9 6,571,523 + Pf6N2E2_5759 0.39 -0.5 6,571,523 + Pf6N2E2_5759 0.39 +0.1 6,571,652 - Pf6N2E2_5759 0.48 +1.3 6,571,652 - Pf6N2E2_5759 0.48 +0.0 6,571,715 + Pf6N2E2_5759 0.52 -0.9 6,571,778 + Pf6N2E2_5759 0.56 -0.6 6,571,779 - Pf6N2E2_5759 0.56 -1.0 6,571,832 + Pf6N2E2_5759 0.60 -1.1 6,571,832 + Pf6N2E2_5759 0.60 -1.3 6,571,833 - Pf6N2E2_5759 0.60 -2.0 6,571,833 - Pf6N2E2_5759 0.60 -1.3 6,571,841 + Pf6N2E2_5759 0.60 -1.5 6,571,841 + Pf6N2E2_5759 0.60 +0.5 6,571,841 + Pf6N2E2_5759 0.60 -0.5 6,571,841 + Pf6N2E2_5759 0.60 -1.3 6,571,841 + Pf6N2E2_5759 0.60 -1.9 6,571,937 + Pf6N2E2_5759 0.67 -0.6 6,571,938 - Pf6N2E2_5759 0.67 -0.2 6,572,178 - Pf6N2E2_5759 0.83 -0.8 6,572,178 - Pf6N2E2_5759 0.83 +0.6 6,572,178 - Pf6N2E2_5759 0.83 +0.1 6,572,249 + Pf6N2E2_5759 0.88 -1.2 6,572,250 - Pf6N2E2_5759 0.88 -1.7 6,572,415 + +0.2 6,572,415 + -0.9 6,572,441 + +0.8 6,572,442 - -0.3 6,572,583 + +0.7 6,572,583 + +0.0 6,572,583 + +0.2 6,572,584 - -0.6 6,572,584 - -0.2 6,572,584 - -0.0 6,572,647 - +0.0 6,572,647 - -0.4 6,572,954 + Pf6N2E2_5760 0.11 +2.1 6,572,954 + Pf6N2E2_5760 0.11 +0.5 6,572,955 - Pf6N2E2_5760 0.11 +0.1 6,573,068 - Pf6N2E2_5760 0.14 +0.3 6,573,068 - Pf6N2E2_5760 0.14 +0.6
Or see this region's nucleotide sequence