Experiment: sodium bromide 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3723 and Pf6N2E2_3724 are separated by 10 nucleotides Pf6N2E2_3724 and Pf6N2E2_3725 overlap by 4 nucleotides Pf6N2E2_3725 and Pf6N2E2_3726 overlap by 4 nucleotides
Pf6N2E2_3723 - FIG022199: FAD-binding protein, at 4,337,280 to 4,338,527
_3723
Pf6N2E2_3724 - FIG025233: SAM-dependent methyltransferases, at 4,338,538 to 4,339,266
_3724
Pf6N2E2_3725 - FIG085779: Lipoprotein, at 4,339,263 to 4,339,745
_3725
Pf6N2E2_3726 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 4,339,742 to 4,340,938
_3726
Position (kb)
4339
4340 Strain fitness (log2 ratio)
-1
0
1 at 4338.339 kb on + strand, within Pf6N2E2_3723 at 4338.339 kb on + strand, within Pf6N2E2_3723 at 4338.544 kb on + strand at 4338.545 kb on - strand at 4338.545 kb on - strand at 4338.545 kb on - strand at 4338.559 kb on + strand at 4338.559 kb on + strand at 4338.560 kb on - strand at 4338.560 kb on - strand at 4338.560 kb on - strand at 4338.724 kb on + strand, within Pf6N2E2_3724 at 4338.725 kb on - strand, within Pf6N2E2_3724 at 4338.953 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.069 kb on + strand, within Pf6N2E2_3724 at 4339.602 kb on + strand, within Pf6N2E2_3725 at 4339.603 kb on - strand, within Pf6N2E2_3725 at 4339.663 kb on - strand, within Pf6N2E2_3725 at 4339.751 kb on + strand at 4339.752 kb on - strand at 4340.010 kb on - strand, within Pf6N2E2_3726 at 4340.088 kb on - strand, within Pf6N2E2_3726 at 4340.118 kb on - strand, within Pf6N2E2_3726 at 4340.193 kb on - strand, within Pf6N2E2_3726 at 4340.193 kb on - strand, within Pf6N2E2_3726 at 4340.491 kb on + strand, within Pf6N2E2_3726 at 4340.491 kb on + strand, within Pf6N2E2_3726 at 4340.492 kb on - strand, within Pf6N2E2_3726 at 4340.583 kb on - strand, within Pf6N2E2_3726
Per-strain Table
Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M remove 4,338,339 + Pf6N2E2_3723 0.85 -0.0 4,338,339 + Pf6N2E2_3723 0.85 +0.8 4,338,544 + -0.4 4,338,545 - +0.7 4,338,545 - -0.3 4,338,545 - +0.6 4,338,559 + +0.4 4,338,559 + +1.0 4,338,560 - -0.4 4,338,560 - -0.6 4,338,560 - -0.7 4,338,724 + Pf6N2E2_3724 0.26 +0.2 4,338,725 - Pf6N2E2_3724 0.26 -0.5 4,338,953 + Pf6N2E2_3724 0.57 +0.2 4,339,000 + Pf6N2E2_3724 0.63 +0.1 4,339,000 + Pf6N2E2_3724 0.63 -0.3 4,339,000 + Pf6N2E2_3724 0.63 +0.3 4,339,001 - Pf6N2E2_3724 0.64 +0.2 4,339,001 - Pf6N2E2_3724 0.64 -0.5 4,339,069 + Pf6N2E2_3724 0.73 -0.2 4,339,602 + Pf6N2E2_3725 0.70 -0.8 4,339,603 - Pf6N2E2_3725 0.70 -1.0 4,339,663 - Pf6N2E2_3725 0.83 -0.0 4,339,751 + +0.8 4,339,752 - +0.3 4,340,010 - Pf6N2E2_3726 0.22 -0.5 4,340,088 - Pf6N2E2_3726 0.29 +1.0 4,340,118 - Pf6N2E2_3726 0.31 -0.3 4,340,193 - Pf6N2E2_3726 0.38 -0.0 4,340,193 - Pf6N2E2_3726 0.38 -0.2 4,340,491 + Pf6N2E2_3726 0.63 +0.0 4,340,491 + Pf6N2E2_3726 0.63 +0.3 4,340,492 - Pf6N2E2_3726 0.63 +0.1 4,340,583 - Pf6N2E2_3726 0.70 -0.8
Or see this region's nucleotide sequence