Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3585

Experiment: sodium bromide 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3584 and Pf6N2E2_3585 are separated by 229 nucleotidesPf6N2E2_3585 and Pf6N2E2_3586 are separated by 4 nucleotides Pf6N2E2_3584 - Transcriptional regulator, LysR family, at 4,175,500 to 4,176,408 _3584 Pf6N2E2_3585 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 4,176,638 to 4,177,864 _3585 Pf6N2E2_3586 - NAD synthetase (EC 6.3.1.5), at 4,177,869 to 4,178,696 _3586 Position (kb) 4176 4177 4178Strain fitness (log2 ratio) -2 -1 0 1at 4175.710 kb on + strand, within Pf6N2E2_3584at 4175.710 kb on + strand, within Pf6N2E2_3584at 4175.711 kb on - strand, within Pf6N2E2_3584at 4175.711 kb on - strand, within Pf6N2E2_3584at 4175.754 kb on + strand, within Pf6N2E2_3584at 4175.761 kb on + strand, within Pf6N2E2_3584at 4175.761 kb on + strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.773 kb on + strand, within Pf6N2E2_3584at 4175.773 kb on + strand, within Pf6N2E2_3584at 4175.774 kb on - strand, within Pf6N2E2_3584at 4175.944 kb on + strand, within Pf6N2E2_3584at 4175.945 kb on - strand, within Pf6N2E2_3584at 4176.133 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.262 kb on - strand, within Pf6N2E2_3584at 4176.307 kb on + strand, within Pf6N2E2_3584at 4176.307 kb on + strand, within Pf6N2E2_3584at 4176.308 kb on - strand, within Pf6N2E2_3584at 4176.308 kb on - strand, within Pf6N2E2_3584at 4176.308 kb on - strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.406 kb on + strandat 4176.406 kb on + strandat 4176.534 kb on + strandat 4176.637 kb on + strandat 4176.637 kb on + strandat 4176.637 kb on + strandat 4176.637 kb on + strandat 4176.637 kb on + strandat 4176.637 kb on + strandat 4176.638 kb on - strandat 4176.638 kb on - strandat 4176.638 kb on - strandat 4176.651 kb on + strandat 4176.651 kb on + strandat 4176.651 kb on + strandat 4176.651 kb on + strandat 4176.651 kb on + strandat 4176.651 kb on + strandat 4176.652 kb on - strandat 4176.652 kb on - strandat 4176.652 kb on - strandat 4176.665 kb on - strandat 4176.695 kb on + strandat 4176.696 kb on - strandat 4176.732 kb on - strandat 4176.792 kb on - strand, within Pf6N2E2_3585at 4176.933 kb on - strand, within Pf6N2E2_3585at 4176.963 kb on + strand, within Pf6N2E2_3585at 4176.963 kb on + strand, within Pf6N2E2_3585at 4176.963 kb on + strand, within Pf6N2E2_3585at 4176.963 kb on + strand, within Pf6N2E2_3585at 4176.963 kb on + strand, within Pf6N2E2_3585at 4176.963 kb on + strand, within Pf6N2E2_3585at 4176.963 kb on + strand, within Pf6N2E2_3585at 4176.964 kb on - strand, within Pf6N2E2_3585at 4176.964 kb on - strand, within Pf6N2E2_3585at 4177.392 kb on - strand, within Pf6N2E2_3585at 4177.645 kb on + strand, within Pf6N2E2_3585at 4177.646 kb on - strand, within Pf6N2E2_3585at 4177.696 kb on - strand, within Pf6N2E2_3585at 4177.696 kb on - strand, within Pf6N2E2_3585at 4177.696 kb on - strand, within Pf6N2E2_3585at 4177.717 kb on + strand, within Pf6N2E2_3585at 4177.805 kb on + strandat 4177.805 kb on + strandat 4177.805 kb on + strandat 4177.805 kb on + strandat 4177.806 kb on - strandat 4177.827 kb on + strandat 4177.827 kb on + strandat 4177.828 kb on - strandat 4177.879 kb on + strandat 4177.970 kb on + strand, within Pf6N2E2_3586at 4177.971 kb on - strand, within Pf6N2E2_3586at 4178.106 kb on + strand, within Pf6N2E2_3586at 4178.106 kb on + strand, within Pf6N2E2_3586at 4178.297 kb on + strand, within Pf6N2E2_3586at 4178.297 kb on + strand, within Pf6N2E2_3586at 4178.315 kb on + strand, within Pf6N2E2_3586at 4178.315 kb on + strand, within Pf6N2E2_3586at 4178.315 kb on + strand, within Pf6N2E2_3586at 4178.316 kb on - strand, within Pf6N2E2_3586at 4178.328 kb on + strand, within Pf6N2E2_3586at 4178.328 kb on + strand, within Pf6N2E2_3586at 4178.328 kb on + strand, within Pf6N2E2_3586at 4178.328 kb on + strand, within Pf6N2E2_3586at 4178.328 kb on + strand, within Pf6N2E2_3586at 4178.328 kb on + strand, within Pf6N2E2_3586at 4178.329 kb on - strand, within Pf6N2E2_3586at 4178.329 kb on - strand, within Pf6N2E2_3586at 4178.329 kb on - strand, within Pf6N2E2_3586at 4178.580 kb on + strand, within Pf6N2E2_3586at 4178.580 kb on + strand, within Pf6N2E2_3586at 4178.580 kb on + strand, within Pf6N2E2_3586at 4178.581 kb on - strand, within Pf6N2E2_3586at 4178.652 kb on + strandat 4178.652 kb on + strandat 4178.699 kb on - strandat 4178.799 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M
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4,175,710 + Pf6N2E2_3584 0.23 -2.6
4,175,710 + Pf6N2E2_3584 0.23 +1.1
4,175,711 - Pf6N2E2_3584 0.23 -0.3
4,175,711 - Pf6N2E2_3584 0.23 -0.0
4,175,754 + Pf6N2E2_3584 0.28 -0.2
4,175,761 + Pf6N2E2_3584 0.29 +0.2
4,175,761 + Pf6N2E2_3584 0.29 -1.0
4,175,762 - Pf6N2E2_3584 0.29 -2.2
4,175,762 - Pf6N2E2_3584 0.29 +0.2
4,175,762 - Pf6N2E2_3584 0.29 -1.7
4,175,762 - Pf6N2E2_3584 0.29 +1.3
4,175,762 - Pf6N2E2_3584 0.29 -0.8
4,175,773 + Pf6N2E2_3584 0.30 +0.6
4,175,773 + Pf6N2E2_3584 0.30 +0.1
4,175,774 - Pf6N2E2_3584 0.30 -0.4
4,175,944 + Pf6N2E2_3584 0.49 -0.1
4,175,945 - Pf6N2E2_3584 0.49 -0.7
4,176,133 + Pf6N2E2_3584 0.70 -0.9
4,176,147 + Pf6N2E2_3584 0.71 -1.2
4,176,147 + Pf6N2E2_3584 0.71 -0.4
4,176,147 + Pf6N2E2_3584 0.71 -1.3
4,176,147 + Pf6N2E2_3584 0.71 +0.1
4,176,147 + Pf6N2E2_3584 0.71 -0.1
4,176,147 + Pf6N2E2_3584 0.71 -0.7
4,176,147 + Pf6N2E2_3584 0.71 -0.3
4,176,147 + Pf6N2E2_3584 0.71 +0.2
4,176,147 + Pf6N2E2_3584 0.71 -0.1
4,176,147 + Pf6N2E2_3584 0.71 -0.3
4,176,147 + Pf6N2E2_3584 0.71 -0.0
4,176,147 + Pf6N2E2_3584 0.71 +0.1
4,176,147 + Pf6N2E2_3584 0.71 +0.8
4,176,147 + Pf6N2E2_3584 0.71 -0.1
4,176,147 + Pf6N2E2_3584 0.71 +0.0
4,176,147 + Pf6N2E2_3584 0.71 -1.3
4,176,147 + Pf6N2E2_3584 0.71 +0.0
4,176,147 + Pf6N2E2_3584 0.71 +0.1
4,176,147 + Pf6N2E2_3584 0.71 +0.2
4,176,147 + Pf6N2E2_3584 0.71 -1.1
4,176,147 + Pf6N2E2_3584 0.71 +0.8
4,176,147 + Pf6N2E2_3584 0.71 +0.6
4,176,147 + Pf6N2E2_3584 0.71 -0.3
4,176,147 + Pf6N2E2_3584 0.71 +0.7
4,176,148 - Pf6N2E2_3584 0.71 -0.4
4,176,148 - Pf6N2E2_3584 0.71 +0.3
4,176,148 - Pf6N2E2_3584 0.71 +0.5
4,176,148 - Pf6N2E2_3584 0.71 +0.7
4,176,148 - Pf6N2E2_3584 0.71 +0.4
4,176,148 - Pf6N2E2_3584 0.71 -0.5
4,176,148 - Pf6N2E2_3584 0.71 -1.5
4,176,148 - Pf6N2E2_3584 0.71 -0.1
4,176,148 - Pf6N2E2_3584 0.71 -0.4
4,176,148 - Pf6N2E2_3584 0.71 +0.3
4,176,148 - Pf6N2E2_3584 0.71 -1.1
4,176,148 - Pf6N2E2_3584 0.71 -1.2
4,176,148 - Pf6N2E2_3584 0.71 +0.8
4,176,148 - Pf6N2E2_3584 0.71 +0.4
4,176,148 - Pf6N2E2_3584 0.71 -1.4
4,176,148 - Pf6N2E2_3584 0.71 -0.8
4,176,148 - Pf6N2E2_3584 0.71 +1.3
4,176,148 - Pf6N2E2_3584 0.71 -0.4
4,176,151 + Pf6N2E2_3584 0.72 -0.3
4,176,151 + Pf6N2E2_3584 0.72 -0.5
4,176,151 + Pf6N2E2_3584 0.72 +0.8
4,176,151 + Pf6N2E2_3584 0.72 +1.6
4,176,152 - Pf6N2E2_3584 0.72 -0.3
4,176,152 - Pf6N2E2_3584 0.72 +0.7
4,176,152 - Pf6N2E2_3584 0.72 +0.2
4,176,152 - Pf6N2E2_3584 0.72 -1.0
4,176,178 + Pf6N2E2_3584 0.75 -0.0
4,176,178 + Pf6N2E2_3584 0.75 +0.1
4,176,178 + Pf6N2E2_3584 0.75 +0.6
4,176,178 + Pf6N2E2_3584 0.75 -0.6
4,176,178 + Pf6N2E2_3584 0.75 -0.5
4,176,178 + Pf6N2E2_3584 0.75 +0.5
4,176,178 + Pf6N2E2_3584 0.75 +0.7
4,176,178 + Pf6N2E2_3584 0.75 +0.5
4,176,179 - Pf6N2E2_3584 0.75 -0.6
4,176,179 - Pf6N2E2_3584 0.75 +0.2
4,176,179 - Pf6N2E2_3584 0.75 +0.0
4,176,179 - Pf6N2E2_3584 0.75 +0.1
4,176,179 - Pf6N2E2_3584 0.75 +0.9
4,176,179 - Pf6N2E2_3584 0.75 -0.3
4,176,179 - Pf6N2E2_3584 0.75 +0.2
4,176,179 - Pf6N2E2_3584 0.75 +0.0
4,176,262 - Pf6N2E2_3584 0.84 -0.2
4,176,307 + Pf6N2E2_3584 0.89 -0.1
4,176,307 + Pf6N2E2_3584 0.89 +1.0
4,176,308 - Pf6N2E2_3584 0.89 +0.7
4,176,308 - Pf6N2E2_3584 0.89 -1.3
4,176,308 - Pf6N2E2_3584 0.89 -0.4
4,176,310 + Pf6N2E2_3584 0.89 +0.2
4,176,310 + Pf6N2E2_3584 0.89 -0.7
4,176,310 + Pf6N2E2_3584 0.89 -0.1
4,176,310 + Pf6N2E2_3584 0.89 +0.8
4,176,310 + Pf6N2E2_3584 0.89 +1.4
4,176,311 - Pf6N2E2_3584 0.89 +0.2
4,176,311 - Pf6N2E2_3584 0.89 +0.1
4,176,311 - Pf6N2E2_3584 0.89 -0.3
4,176,311 - Pf6N2E2_3584 0.89 +0.5
4,176,311 - Pf6N2E2_3584 0.89 +0.1
4,176,311 - Pf6N2E2_3584 0.89 -0.1
4,176,406 + +0.4
4,176,406 + +1.2
4,176,534 + +1.0
4,176,637 + -1.6
4,176,637 + -0.3
4,176,637 + -0.1
4,176,637 + +0.4
4,176,637 + -0.4
4,176,637 + +0.4
4,176,638 - -0.3
4,176,638 - -0.5
4,176,638 - -2.0
4,176,651 + -0.0
4,176,651 + -0.9
4,176,651 + +0.3
4,176,651 + +0.5
4,176,651 + +0.7
4,176,651 + +0.4
4,176,652 - -1.6
4,176,652 - +0.1
4,176,652 - -0.5
4,176,665 - +0.5
4,176,695 + +0.6
4,176,696 - +0.4
4,176,732 - +0.6
4,176,792 - Pf6N2E2_3585 0.13 +0.5
4,176,933 - Pf6N2E2_3585 0.24 +0.5
4,176,963 + Pf6N2E2_3585 0.26 +0.4
4,176,963 + Pf6N2E2_3585 0.26 +0.3
4,176,963 + Pf6N2E2_3585 0.26 +0.2
4,176,963 + Pf6N2E2_3585 0.26 +0.1
4,176,963 + Pf6N2E2_3585 0.26 +0.7
4,176,963 + Pf6N2E2_3585 0.26 +0.2
4,176,963 + Pf6N2E2_3585 0.26 -0.1
4,176,964 - Pf6N2E2_3585 0.27 +0.4
4,176,964 - Pf6N2E2_3585 0.27 +1.1
4,177,392 - Pf6N2E2_3585 0.61 +0.5
4,177,645 + Pf6N2E2_3585 0.82 +0.9
4,177,646 - Pf6N2E2_3585 0.82 +0.1
4,177,696 - Pf6N2E2_3585 0.86 -0.2
4,177,696 - Pf6N2E2_3585 0.86 +1.2
4,177,696 - Pf6N2E2_3585 0.86 +0.6
4,177,717 + Pf6N2E2_3585 0.88 +0.4
4,177,805 + -0.6
4,177,805 + +0.5
4,177,805 + -0.3
4,177,805 + +0.8
4,177,806 - -2.1
4,177,827 + +0.2
4,177,827 + -0.8
4,177,828 - +0.6
4,177,879 + +0.1
4,177,970 + Pf6N2E2_3586 0.12 -0.1
4,177,971 - Pf6N2E2_3586 0.12 -0.4
4,178,106 + Pf6N2E2_3586 0.29 +0.1
4,178,106 + Pf6N2E2_3586 0.29 +1.2
4,178,297 + Pf6N2E2_3586 0.52 +0.3
4,178,297 + Pf6N2E2_3586 0.52 +0.5
4,178,315 + Pf6N2E2_3586 0.54 -0.6
4,178,315 + Pf6N2E2_3586 0.54 +0.9
4,178,315 + Pf6N2E2_3586 0.54 +0.5
4,178,316 - Pf6N2E2_3586 0.54 -0.1
4,178,328 + Pf6N2E2_3586 0.55 +0.2
4,178,328 + Pf6N2E2_3586 0.55 +0.1
4,178,328 + Pf6N2E2_3586 0.55 +0.3
4,178,328 + Pf6N2E2_3586 0.55 +1.0
4,178,328 + Pf6N2E2_3586 0.55 -0.5
4,178,328 + Pf6N2E2_3586 0.55 -1.0
4,178,329 - Pf6N2E2_3586 0.56 +0.6
4,178,329 - Pf6N2E2_3586 0.56 -0.1
4,178,329 - Pf6N2E2_3586 0.56 +0.4
4,178,580 + Pf6N2E2_3586 0.86 +0.3
4,178,580 + Pf6N2E2_3586 0.86 +0.8
4,178,580 + Pf6N2E2_3586 0.86 +1.1
4,178,581 - Pf6N2E2_3586 0.86 +0.7
4,178,652 + -0.8
4,178,652 + +0.3
4,178,699 - -0.8
4,178,799 + -1.0

Or see this region's nucleotide sequence