Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2414

Experiment: sodium bromide 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2412 and Pf6N2E2_2413 are separated by 93 nucleotidesPf6N2E2_2413 and Pf6N2E2_2414 are separated by 206 nucleotidesPf6N2E2_2414 and Pf6N2E2_2415 are separated by 71 nucleotides Pf6N2E2_2412 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 2,865,554 to 2,866,096 _2412 Pf6N2E2_2413 - FIG074102: hypothetical protein, at 2,866,190 to 2,866,474 _2413 Pf6N2E2_2414 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 2,866,681 to 2,867,490 _2414 Pf6N2E2_2415 - Chemotaxis protein CheV (EC 2.7.3.-), at 2,867,562 to 2,868,485 _2415 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -2 -1 0 1 2at 2865.860 kb on + strand, within Pf6N2E2_2412at 2866.148 kb on + strandat 2866.149 kb on - strandat 2866.195 kb on + strandat 2866.195 kb on + strandat 2866.196 kb on - strandat 2866.196 kb on - strandat 2866.196 kb on - strandat 2866.208 kb on + strandat 2866.209 kb on - strandat 2866.289 kb on + strand, within Pf6N2E2_2413at 2866.290 kb on - strand, within Pf6N2E2_2413at 2866.451 kb on + strandat 2866.452 kb on - strandat 2866.485 kb on + strandat 2866.485 kb on + strandat 2866.485 kb on + strandat 2866.505 kb on + strandat 2866.506 kb on - strandat 2866.610 kb on - strandat 2866.778 kb on + strand, within Pf6N2E2_2414at 2867.061 kb on + strand, within Pf6N2E2_2414at 2867.061 kb on + strand, within Pf6N2E2_2414at 2867.062 kb on - strand, within Pf6N2E2_2414at 2867.130 kb on + strand, within Pf6N2E2_2414at 2867.131 kb on - strand, within Pf6N2E2_2414at 2867.208 kb on + strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414at 2867.525 kb on + strandat 2867.525 kb on + strandat 2867.525 kb on + strandat 2867.525 kb on + strandat 2867.525 kb on + strandat 2867.526 kb on - strandat 2867.526 kb on - strandat 2867.526 kb on - strandat 2867.526 kb on - strandat 2867.526 kb on - strandat 2867.527 kb on + strandat 2867.527 kb on + strandat 2867.527 kb on + strandat 2867.527 kb on + strandat 2867.528 kb on - strandat 2867.528 kb on - strandat 2867.528 kb on - strandat 2867.589 kb on + strandat 2867.692 kb on - strand, within Pf6N2E2_2415at 2867.692 kb on - strand, within Pf6N2E2_2415at 2867.692 kb on - strand, within Pf6N2E2_2415at 2867.692 kb on - strand, within Pf6N2E2_2415at 2867.698 kb on + strand, within Pf6N2E2_2415at 2867.698 kb on + strand, within Pf6N2E2_2415at 2867.698 kb on + strand, within Pf6N2E2_2415at 2867.698 kb on + strand, within Pf6N2E2_2415at 2867.698 kb on + strand, within Pf6N2E2_2415at 2867.698 kb on + strand, within Pf6N2E2_2415at 2867.699 kb on - strand, within Pf6N2E2_2415at 2867.699 kb on - strand, within Pf6N2E2_2415at 2867.699 kb on - strand, within Pf6N2E2_2415at 2867.699 kb on - strand, within Pf6N2E2_2415at 2867.699 kb on - strand, within Pf6N2E2_2415at 2867.795 kb on + strand, within Pf6N2E2_2415at 2867.796 kb on - strand, within Pf6N2E2_2415at 2868.010 kb on + strand, within Pf6N2E2_2415at 2868.011 kb on - strand, within Pf6N2E2_2415at 2868.091 kb on + strand, within Pf6N2E2_2415at 2868.091 kb on + strand, within Pf6N2E2_2415at 2868.092 kb on - strand, within Pf6N2E2_2415at 2868.092 kb on - strand, within Pf6N2E2_2415at 2868.092 kb on - strand, within Pf6N2E2_2415at 2868.196 kb on + strand, within Pf6N2E2_2415at 2868.196 kb on + strand, within Pf6N2E2_2415at 2868.197 kb on - strand, within Pf6N2E2_2415at 2868.197 kb on - strand, within Pf6N2E2_2415at 2868.197 kb on - strand, within Pf6N2E2_2415at 2868.197 kb on - strand, within Pf6N2E2_2415at 2868.197 kb on - strand, within Pf6N2E2_2415at 2868.462 kb on + strandat 2868.462 kb on + strandat 2868.463 kb on - strandat 2868.463 kb on - strandat 2868.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium bromide 0.0125 M
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2,865,860 + Pf6N2E2_2412 0.56 -1.1
2,866,148 + +0.4
2,866,149 - +0.4
2,866,195 + +0.4
2,866,195 + +0.2
2,866,196 - -0.3
2,866,196 - +1.2
2,866,196 - +0.4
2,866,208 + +1.0
2,866,209 - -1.9
2,866,289 + Pf6N2E2_2413 0.35 +0.1
2,866,290 - Pf6N2E2_2413 0.35 +0.0
2,866,451 + +0.2
2,866,452 - +0.6
2,866,485 + +0.3
2,866,485 + -0.5
2,866,485 + +0.5
2,866,505 + -0.3
2,866,506 - +0.1
2,866,610 - -0.2
2,866,778 + Pf6N2E2_2414 0.12 -0.2
2,867,061 + Pf6N2E2_2414 0.47 -0.6
2,867,061 + Pf6N2E2_2414 0.47 -0.4
2,867,062 - Pf6N2E2_2414 0.47 -0.0
2,867,130 + Pf6N2E2_2414 0.55 -2.1
2,867,131 - Pf6N2E2_2414 0.56 -0.3
2,867,208 + Pf6N2E2_2414 0.65 -0.6
2,867,209 - Pf6N2E2_2414 0.65 -0.1
2,867,209 - Pf6N2E2_2414 0.65 -1.2
2,867,209 - Pf6N2E2_2414 0.65 +0.1
2,867,209 - Pf6N2E2_2414 0.65 -0.9
2,867,525 + +0.7
2,867,525 + +0.1
2,867,525 + +0.1
2,867,525 + -1.3
2,867,525 + -0.2
2,867,526 - +0.8
2,867,526 - -0.5
2,867,526 - +0.2
2,867,526 - +0.2
2,867,526 - +1.1
2,867,527 + +0.5
2,867,527 + -0.7
2,867,527 + -1.3
2,867,527 + +0.8
2,867,528 - -0.3
2,867,528 - -1.0
2,867,528 - +0.2
2,867,589 + -0.0
2,867,692 - Pf6N2E2_2415 0.14 +0.3
2,867,692 - Pf6N2E2_2415 0.14 -0.1
2,867,692 - Pf6N2E2_2415 0.14 -0.4
2,867,692 - Pf6N2E2_2415 0.14 +1.1
2,867,698 + Pf6N2E2_2415 0.15 -0.6
2,867,698 + Pf6N2E2_2415 0.15 -0.5
2,867,698 + Pf6N2E2_2415 0.15 -0.8
2,867,698 + Pf6N2E2_2415 0.15 +0.4
2,867,698 + Pf6N2E2_2415 0.15 -0.7
2,867,698 + Pf6N2E2_2415 0.15 +0.7
2,867,699 - Pf6N2E2_2415 0.15 +1.1
2,867,699 - Pf6N2E2_2415 0.15 -0.6
2,867,699 - Pf6N2E2_2415 0.15 +2.0
2,867,699 - Pf6N2E2_2415 0.15 -1.3
2,867,699 - Pf6N2E2_2415 0.15 -0.2
2,867,795 + Pf6N2E2_2415 0.25 -0.3
2,867,796 - Pf6N2E2_2415 0.25 -0.5
2,868,010 + Pf6N2E2_2415 0.48 +0.2
2,868,011 - Pf6N2E2_2415 0.49 +0.2
2,868,091 + Pf6N2E2_2415 0.57 -1.6
2,868,091 + Pf6N2E2_2415 0.57 -0.9
2,868,092 - Pf6N2E2_2415 0.57 +0.6
2,868,092 - Pf6N2E2_2415 0.57 -0.4
2,868,092 - Pf6N2E2_2415 0.57 -0.4
2,868,196 + Pf6N2E2_2415 0.69 -0.4
2,868,196 + Pf6N2E2_2415 0.69 -0.8
2,868,197 - Pf6N2E2_2415 0.69 -0.5
2,868,197 - Pf6N2E2_2415 0.69 +1.7
2,868,197 - Pf6N2E2_2415 0.69 +0.3
2,868,197 - Pf6N2E2_2415 0.69 +0.7
2,868,197 - Pf6N2E2_2415 0.69 +0.7
2,868,462 + -2.1
2,868,462 + +1.0
2,868,463 - -0.5
2,868,463 - +0.0
2,868,463 - +0.5

Or see this region's nucleotide sequence