Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18565

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
4,199,808	+				-2.3
4,199,808	+				-1.6
4,199,808	+				-1.4
4,199,808	+				-0.9
4,199,808	+				-0.1
4,199,808	+				-1.4
4,199,808	+				-2.2
4,199,808	+				-2.7
4,199,808	+				-1.6
4,199,808	+				-1.7
4,199,808	+				-0.7
4,199,808	+				-0.7
4,199,808	+				+0.6
4,199,808	+				-0.5
4,199,808	+				+0.9
4,199,808	+				-0.0
4,199,808	+				+1.8
4,199,808	+				-1.2
4,199,808	+				-0.8
4,199,808	+				-2.3
4,199,808	+				+1.3
4,199,808	+				+1.3
4,199,808	+				-0.1
4,199,808	+				+0.8
4,199,808	+				-0.2
4,199,808	+				-0.2
4,199,808	+				+0.9
4,199,809	-				+0.2
4,199,809	-				+0.8
4,199,809	-				+0.7
4,199,809	-				-1.0
4,199,809	-				+1.3
4,199,809	-				+1.3
4,199,809	-				-0.1
4,199,809	-				-1.9
4,199,809	-				+0.3
4,199,809	-				-2.9
4,199,809	-				-2.9
4,199,809	-				+0.1
4,199,809	-				-0.3
4,199,809	-				+0.8
4,199,809	-				+0.8
4,199,809	-				-0.2
4,199,809	-				-0.5
4,199,809	-				-2.5
4,199,809	-				-0.3
4,199,821	+				-0.6
4,199,821	+				+0.8
4,199,821	+				-1.2
4,199,821	+				-1.8
4,199,822	-				-3.3
4,199,890	+		PFLU_RS18555	0.14	+3.8
4,199,890	+		PFLU_RS18555	0.14	-2.9
4,199,891	-		PFLU_RS18555	0.14	-0.4
4,199,933	+		PFLU_RS18555	0.26	+1.8
4,199,946	+		PFLU_RS18555	0.29	+3.6
4,199,946	+		PFLU_RS18555	0.29	-2.0
4,199,946	+		PFLU_RS18555	0.29	-0.2
4,199,946	+		PFLU_RS18555	0.29	-0.6
4,199,946	+		PFLU_RS18555	0.29	-0.8
4,199,946	+		PFLU_RS18555	0.29	-0.2
4,199,947	-		PFLU_RS18555	0.30	-0.7
4,199,947	-		PFLU_RS18555	0.30	+0.4
4,199,947	-		PFLU_RS18555	0.30	+0.4
4,199,947	-		PFLU_RS18555	0.30	+1.1
4,199,947	-		PFLU_RS18555	0.30	-1.8
4,199,947	-		PFLU_RS18555	0.30	+0.2
4,199,947	-		PFLU_RS18555	0.30	-0.1
4,199,947	-		PFLU_RS18555	0.30	-0.5
4,199,947	-		PFLU_RS18555	0.30	+0.9
4,199,947	-		PFLU_RS18555	0.30	+0.2
4,199,979	+		PFLU_RS18555	0.38	-2.2
4,199,979	+		PFLU_RS18555	0.38	-0.8
4,199,979	+		PFLU_RS18555	0.38	-0.7
4,199,979	+		PFLU_RS18555	0.38	+0.8
4,199,979	+		PFLU_RS18555	0.38	-1.2
4,199,979	+		PFLU_RS18555	0.38	-0.8
4,199,979	+		PFLU_RS18555	0.38	-1.7
4,199,980	-		PFLU_RS18555	0.38	+1.4
4,199,980	-		PFLU_RS18555	0.38	-2.7
4,199,980	-		PFLU_RS18555	0.38	+2.2
4,199,980	-		PFLU_RS18555	0.38	-3.2
4,199,980	-		PFLU_RS18555	0.38	+0.8
4,200,009	-		PFLU_RS18555	0.46	-1.0
4,200,009	-		PFLU_RS18555	0.46	+0.2
4,200,052	+		PFLU_RS18555	0.58	-0.7
4,200,052	+		PFLU_RS18555	0.58	+1.6
4,200,053	-		PFLU_RS18555	0.58	+0.7
4,200,079	+		PFLU_RS18555	0.65	-1.0
4,200,079	+		PFLU_RS18555	0.65	-0.4
4,200,079	+		PFLU_RS18555	0.65	-0.2
4,200,079	+		PFLU_RS18555	0.65	-1.8
4,200,079	+		PFLU_RS18555	0.65	-0.5
4,200,079	+		PFLU_RS18555	0.65	-2.8
4,200,079	+		PFLU_RS18555	0.65	-0.6
4,200,079	+		PFLU_RS18555	0.65	-1.4
4,200,079	+		PFLU_RS18555	0.65	-1.9
4,200,079	+		PFLU_RS18555	0.65	+0.7
4,200,079	+		PFLU_RS18555	0.65	+0.2
4,200,079	+		PFLU_RS18555	0.65	-0.7
4,200,079	+		PFLU_RS18555	0.65	-0.2
4,200,080	-		PFLU_RS18555	0.66	+1.8
4,200,080	-		PFLU_RS18555	0.66	-1.2
4,200,080	-		PFLU_RS18555	0.66	+1.8
4,200,080	-		PFLU_RS18555	0.66	-1.4
4,200,080	-		PFLU_RS18555	0.66	-0.8
4,200,080	-		PFLU_RS18555	0.66	+1.5
4,200,080	-		PFLU_RS18555	0.66	+0.6
4,200,080	-		PFLU_RS18555	0.66	-0.8
4,200,080	-		PFLU_RS18555	0.66	+1.3
4,200,080	-		PFLU_RS18555	0.66	+0.3
4,200,096	+		PFLU_RS18555	0.70	+1.2
4,200,097	-		PFLU_RS18555	0.70	-0.9
4,200,180	+				-0.4
4,200,180	+				-0.6
4,200,181	-				-1.0
4,200,181	-				-1.4
4,200,181	-				-1.2
4,200,235	+				+0.8
4,200,235	+				+1.0
4,200,235	+				+0.8
4,200,235	+				-0.2
4,200,235	+				+0.3
4,200,235	+				-0.1
4,200,235	+				-2.2
4,200,236	-				-1.3
4,200,236	-				+1.0
4,200,236	-				+0.5
4,200,236	-				-1.8
4,200,236	-				+1.3
4,200,294	-				-1.0
4,200,294	-				+0.9
4,200,310	+				+0.2
4,200,310	+				-1.6
4,200,310	+				+0.4
4,200,310	+				-2.4
4,200,310	+				-0.6
4,200,310	+				+1.3
4,200,310	+				+0.2
4,200,310	+				+0.7
4,200,311	-				-1.7
4,200,311	-				+0.2
4,200,319	+				-1.5
4,200,319	+				+1.0
4,200,320	-				-0.2
4,200,320	-				+1.9
4,200,320	-				-0.8
4,200,320	-				+1.0
4,200,320	-				-1.8
4,200,320	-				-1.1
4,200,320	-				+0.3
4,200,360	+				-0.0
4,200,360	+				+0.4
4,200,360	+				-0.8
4,200,360	+				+0.5
4,200,360	+				+0.9
4,200,360	+				-0.4
4,200,360	+				-1.4
4,200,360	+				-0.0
4,200,360	+				-0.8
4,200,361	-				-0.7
4,200,361	-				-2.6
4,200,361	-				-0.0
4,200,361	-				-2.3
4,200,361	-				+1.1
4,200,361	-				-1.0
4,200,361	-				+0.1
4,200,361	-				+0.5
4,200,361	-				-1.0
4,200,361	-				+3.2
4,200,361	-				+1.2
4,200,361	-				-1.7
4,200,361	-				-1.3
4,200,361	-				+0.8
4,200,365	-				+1.5
4,200,383	-				+0.7
4,200,394	+				-0.8
4,200,394	+				+2.0
4,200,394	+				+0.6
4,200,394	+				-2.0
4,200,394	+				+0.3
4,200,394	+				+0.5
4,200,395	-				-1.6
4,200,431	+				+0.8
4,200,431	+				-0.2
4,200,431	+				+0.2
4,200,431	+				-0.2
4,200,431	+				-1.7
4,200,431	+				-0.4
4,200,431	+				+0.6
4,200,431	+				+0.9
4,200,431	+				+0.4
4,200,431	+				+2.1
4,200,431	+				-0.4
4,200,431	+				+0.6
4,200,431	+				-1.0
4,200,432	-				-1.2
4,200,432	-				+0.8
4,200,432	-				+1.7
4,200,432	-				-0.0
4,200,432	-				-0.8
4,200,432	-				-0.3
4,200,432	-				+0.1
4,200,432	-				-1.2
4,200,432	-				+1.4
4,200,432	-				+0.2
4,200,432	-				-1.0
4,200,470	+		PFLU_RS18560	0.14	-1.8
4,200,470	+		PFLU_RS18560	0.14	-1.2
4,200,470	+		PFLU_RS18560	0.14	-1.7
4,200,471	-		PFLU_RS18560	0.14	-0.7
4,200,471	-		PFLU_RS18560	0.14	+1.2
4,200,471	-		PFLU_RS18560	0.14	+1.1
4,200,471	-		PFLU_RS18560	0.14	+1.0
4,200,471	-		PFLU_RS18560	0.14	+0.2
4,200,494	+		PFLU_RS18560	0.22	-0.7
4,200,494	+		PFLU_RS18560	0.22	-0.1
4,200,495	-		PFLU_RS18560	0.23	-1.2
4,200,495	-		PFLU_RS18560	0.23	+0.1
4,200,509	+		PFLU_RS18560	0.28	-0.6
4,200,510	-		PFLU_RS18560	0.28	+0.8
4,200,510	-		PFLU_RS18560	0.28	-1.9
4,200,558	+		PFLU_RS18560	0.46	+0.4
4,200,559	-		PFLU_RS18560	0.46	-2.2
4,200,559	-		PFLU_RS18560	0.46	+1.3
4,200,611	+		PFLU_RS18560	0.65	+1.4
4,200,611	+		PFLU_RS18560	0.65	+0.1
4,200,611	+		PFLU_RS18560	0.65	-0.1
4,200,611	+		PFLU_RS18560	0.65	-0.9
4,200,611	+		PFLU_RS18560	0.65	+0.1
4,200,612	-		PFLU_RS18560	0.65	+0.5
4,200,612	-		PFLU_RS18560	0.65	+0.9
4,200,724	+				+1.3
4,200,724	+				-0.6
4,200,724	+				-0.4
4,200,724	+				+1.6
4,200,725	-				+1.0
4,200,725	-				-0.7
4,200,725	-				-1.8
4,200,725	-				-2.2
4,200,734	+				-1.7
4,200,790	+				+0.3
4,200,790	+				-3.6
4,200,790	+				-0.2
4,200,790	+				+1.5
4,200,790	+				-3.2
4,200,790	+				-0.6
4,200,790	+				+2.1
4,200,790	+				+2.5
4,200,791	-				-0.6
4,200,791	-				+0.2
4,200,791	-				+0.2
4,200,791	-				-0.6
4,200,791	-				+0.2
4,200,791	-				+0.2
4,200,794	+				-0.5
4,200,794	+				+0.5
4,200,794	+				-1.4
4,200,794	+				+0.0
4,200,794	+				+0.3
4,200,794	+				-0.6
4,200,794	+				+0.0
4,200,794	+				+0.2
4,200,794	+				+0.7
4,200,794	+				-0.5
4,200,794	+				-0.1
4,200,794	+				-0.1
4,200,795	-				-0.6
4,200,795	-				-0.4
4,200,795	-				+0.4
4,200,795	-				-2.7
4,200,795	-				-0.1
4,200,795	-				+0.3
4,200,795	-				+0.8
4,200,795	-				-1.1
4,200,795	-				-0.8
4,200,795	-				-1.4
4,200,868	+				-0.1
4,200,868	+				-0.0
4,200,868	+				-2.2
4,200,869	-				-2.5
4,200,869	-				+0.0
4,200,869	-				-0.5
4,200,869	-				-0.8
4,200,869	-				+0.6
4,200,912	-				+0.2
4,200,912	-				+0.6
4,201,006	+		PFLU_RS18565	0.17	+1.3
4,201,006	+		PFLU_RS18565	0.17	-0.4
4,201,006	+		PFLU_RS18565	0.17	-0.4
4,201,006	+		PFLU_RS18565	0.17	+0.3
4,201,006	+		PFLU_RS18565	0.17	-2.3
4,201,007	-		PFLU_RS18565	0.17	-0.6
4,201,007	-		PFLU_RS18565	0.17	+0.3
4,201,007	-		PFLU_RS18565	0.17	+0.9
4,201,007	-		PFLU_RS18565	0.17	-0.6
4,201,007	-		PFLU_RS18565	0.17	+3.5
4,201,007	-		PFLU_RS18565	0.17	+0.8
4,201,007	-		PFLU_RS18565	0.17	-0.4
4,201,007	-		PFLU_RS18565	0.17	+0.8
4,201,007	-		PFLU_RS18565	0.17	+0.8
4,201,007	-		PFLU_RS18565	0.17	+0.9
4,201,010	+		PFLU_RS18565	0.18	+1.3
4,201,010	+		PFLU_RS18565	0.18	+1.2
4,201,011	-		PFLU_RS18565	0.18	+0.1
4,201,011	-		PFLU_RS18565	0.18	-2.6
4,201,019	+		PFLU_RS18565	0.18	-1.0
4,201,019	+		PFLU_RS18565	0.18	-0.6
4,201,019	+		PFLU_RS18565	0.18	+1.1
4,201,019	+		PFLU_RS18565	0.18	+0.4
4,201,020	-		PFLU_RS18565	0.18	+0.3
4,201,020	-		PFLU_RS18565	0.18	+0.7
4,201,020	-		PFLU_RS18565	0.18	+0.3
4,201,020	-		PFLU_RS18565	0.18	+0.3
4,201,020	-		PFLU_RS18565	0.18	+0.8
4,201,061	+		PFLU_RS18565	0.22	-2.1
4,201,117	+		PFLU_RS18565	0.26	-0.0
4,201,117	+		PFLU_RS18565	0.26	+0.6
4,201,117	+		PFLU_RS18565	0.26	+0.4
4,201,118	-		PFLU_RS18565	0.26	+0.8
4,201,118	-		PFLU_RS18565	0.26	+0.9
4,201,118	-		PFLU_RS18565	0.26	-0.2
4,201,118	-		PFLU_RS18565	0.26	+1.4
4,201,118	-		PFLU_RS18565	0.26	+1.1
4,201,153	+		PFLU_RS18565	0.29	-1.2
4,201,153	+		PFLU_RS18565	0.29	-1.9
4,201,153	+		PFLU_RS18565	0.29	-0.6
4,201,154	-		PFLU_RS18565	0.29	-2.9
4,201,154	-		PFLU_RS18565	0.29	+0.6
4,201,154	-		PFLU_RS18565	0.29	-1.7
4,201,154	-		PFLU_RS18565	0.29	-0.7
4,201,154	-		PFLU_RS18565	0.29	+0.6
4,201,154	-		PFLU_RS18565	0.29	+0.6
4,201,154	-		PFLU_RS18565	0.29	+0.5
4,201,215	+		PFLU_RS18565	0.34	-0.8
4,201,215	+		PFLU_RS18565	0.34	+0.4
4,201,215	+		PFLU_RS18565	0.34	+0.2
4,201,215	+		PFLU_RS18565	0.34	+0.1
4,201,215	+		PFLU_RS18565	0.34	+0.2
4,201,216	-		PFLU_RS18565	0.34	-2.0
4,201,216	-		PFLU_RS18565	0.34	+0.6
4,201,216	-		PFLU_RS18565	0.34	-0.7
4,201,304	-		PFLU_RS18565	0.41	+0.2
4,201,304	-		PFLU_RS18565	0.41	+0.1
4,201,304	-		PFLU_RS18565	0.41	+0.9
4,201,361	+		PFLU_RS18565	0.46	+1.2
4,201,361	+		PFLU_RS18565	0.46	+0.3
4,201,362	-		PFLU_RS18565	0.46	+0.2
4,201,362	-		PFLU_RS18565	0.46	-0.2
4,201,393	+		PFLU_RS18565	0.48	+0.8
4,201,393	+		PFLU_RS18565	0.48	+0.1
4,201,393	+		PFLU_RS18565	0.48	-0.6
4,201,393	+		PFLU_RS18565	0.48	-1.6
4,201,393	+		PFLU_RS18565	0.48	+1.8
4,201,393	+		PFLU_RS18565	0.48	+1.4
4,201,393	+		PFLU_RS18565	0.48	-0.4
4,201,393	+		PFLU_RS18565	0.48	-1.3
4,201,393	+		PFLU_RS18565	0.48	+0.3
4,201,394	-		PFLU_RS18565	0.48	+0.1
4,201,394	-		PFLU_RS18565	0.48	-0.5
4,201,394	-		PFLU_RS18565	0.48	+0.2
4,201,394	-		PFLU_RS18565	0.48	+1.3
4,201,394	-		PFLU_RS18565	0.48	-2.4
4,201,394	-		PFLU_RS18565	0.48	-0.3
4,201,394	-		PFLU_RS18565	0.48	+0.5
4,201,394	-		PFLU_RS18565	0.48	-3.2
4,201,394	-		PFLU_RS18565	0.48	+0.2
4,201,394	-		PFLU_RS18565	0.48	+0.3
4,201,561	+		PFLU_RS18565	0.61	-0.0
4,201,562	-		PFLU_RS18565	0.61	+0.6
4,201,662	+		PFLU_RS18565	0.69	-1.2
4,201,662	+		PFLU_RS18565	0.69	-0.7
4,201,662	+		PFLU_RS18565	0.69	-0.4
4,201,662	+		PFLU_RS18565	0.69	-3.1
4,201,662	+		PFLU_RS18565	0.69	-2.2
4,201,662	+		PFLU_RS18565	0.69	+0.1
4,201,662	+		PFLU_RS18565	0.69	-0.5
4,201,662	+		PFLU_RS18565	0.69	-0.2
4,201,662	+		PFLU_RS18565	0.69	-0.2
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